issues
search
gamcil
/
clinker
Gene cluster comparison figure generator
MIT License
531
stars
72
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Clinker producing "blank" plot for 2 identical sequences
#116
iqbal-lab
opened
6 days ago
0
Can we adjust the identity scale in clinker?
#115
fsnibs10
opened
2 months ago
1
✨ feat: enhancement #113
#114
Aurorabili
closed
1 month ago
1
Support for including multiple sequences in genbank files
#113
Aurorabili
closed
1 month ago
2
Can different domains within a gene also be applicable?
#112
xubiy
opened
4 months ago
2
Running clinker via spyder
#111
Wanjofu
opened
5 months ago
0
Renaming coding sequence back to gene number
#110
timeresistance1996
opened
6 months ago
3
Broken pipe error when using clinker to plot gene clusters
#109
jonng2024
closed
5 months ago
2
Gene and species limit
#108
IzenR
closed
6 months ago
1
try example encouter error
#107
nongbaoting
opened
10 months ago
0
Problem with -gf and -cm parameteres
#106
mattbird567
opened
1 year ago
3
-gf/--gene_functions not working?
#105
mattbird567
closed
1 year ago
0
Possible bug in cluster similarity output (-mo option)
#104
dileep-kishore
opened
1 year ago
0
Locus inversion showing incorrect locations
#103
AthinaGav
opened
1 year ago
0
some issues for -mo --matrix_out parameter
#102
Yuki0902
opened
1 year ago
2
The output result has no information
#101
yuezhiTang
closed
11 months ago
4
Errors in using gff and faa file
#100
Xinpeng021001
opened
1 year ago
1
Error in clinker HTML plotting function
#99
Nitin123-4
opened
1 year ago
0
ValueError: not enough values to unpack (expected 2, got 1)
#98
neelam19051
opened
1 year ago
0
Use clinker to visualize individual exons rather than whole gene?
#97
JulieDaz
opened
1 year ago
0
How to visualize a gene on a large chromosome?
#96
JulieDaz
closed
1 year ago
0
the legend
#95
Oelsakha
closed
1 year ago
4
update 0.0.28
#94
oclaisse
opened
1 year ago
3
Can't save changes to session
#93
camilo-monge
closed
1 year ago
2
Similarity score and plotting
#92
LemoAlex
opened
1 year ago
1
Conda package errors
#91
Anto007
closed
1 year ago
3
protein groups and similarity
#90
galacmr
closed
1 year ago
2
Clinker issue: Blocks instead of arrows
#89
clpas
opened
2 years ago
2
How to only generate html files?
#88
pavlohrab
closed
2 years ago
2
clustermap loading slow
#87
yzjie6
closed
2 years ago
1
docs on gff+fasta
#86
nick-youngblut
opened
2 years ago
2
Export SVG instead of html
#85
innovate-invent
opened
2 years ago
0
Clinker usage
#84
EmaBoni
closed
2 years ago
9
Clink does not show any features
#83
MaximePolicarpo
opened
2 years ago
1
Feature request: set font style, link color and gene color
#82
clf-bio
opened
2 years ago
0
Using clinker in windows Cmd shell, only alignement of last name sequences
#81
CWoudstra
opened
2 years ago
6
Questions
#80
yga18
opened
2 years ago
0
Circular sequence panning
#79
erinyoung
closed
7 months ago
0
How to load a session file ?
#78
lireo
closed
2 years ago
2
Truncating the middle of gene clusters & gene group legend
#77
wearegroot91
opened
2 years ago
2
Grouping by function rather than similarity
#76
gamcil
closed
3 years ago
0
ERROR in matrix.select
#75
dooguypapua
closed
3 years ago
2
Issue with running automatically on multiple files due to (BUTTON)clinker screen
#74
ghoresh11
opened
3 years ago
2
Gene label type issue
#73
RvV1979
opened
3 years ago
0
Clinker just stalls without producing output?
#72
Arzamasov
opened
3 years ago
7
gene model colouring issue
#71
ArtemPankin
opened
3 years ago
1
Align Error: seq contains letters not in the alphabet
#70
LeoBusse
closed
3 years ago
2
cluster similarity matrix
#69
azazelsan
opened
3 years ago
3
Error in align
#68
kabilov
closed
3 years ago
5
GFF+Fasta files without line wrapping doesn't display properly
#67
sean-bam
opened
3 years ago
1
Next