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https://mp.weixin.qq.com/s/LpFE7KRNCMdUl2VYFNOk6w
ixxmu updated
2 years ago
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**Is your feature request related to a problem? Please describe.**
Right now, for WGS cases the variant calling (tnhaplotyper, tnscope,tnsnv, manta) results in too many variants (~2000-10000 variants…
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Traceback (most recent call last):
File "/ibex/scratch/projects/c2014/bcbio2/anaconda/lib/python3.6/site-packages/bcbio/provenance/do.py", line 26, in run
_do_run(cmd, checks, log_stdout, env=…
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#### What analysis are you proposing and why?
Create a new MAF which contains consensus SNV calls from [consensus snv calling](https://github.com/AlexsLemonade/OpenPBTA-analysis/tree/master/analy…
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As a busy person, I want to drink coffee so that I wake up.
Vi har bestämt oss för två olika typer av delivery för cancer
1. Fastq-filer direkt från sekvensering.
Detta kan vi idag redan göra …
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https://mp.weixin.qq.com/s/zr1HF-2_lEx-jyNn_u8Thw
ixxmu updated
3 years ago
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So that we can run @iskandr's pipeline on it and get a short-list of "neoepitopes" that we can work our way through.
Submitted MC38B cell pellets (as well as PBMCs from B6 mouse as our normal) to G…
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Develop Scout for cancer ready for delivery to customers
Define MVP and implement required features
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https://mp.weixin.qq.com/s/fxg6dwwlW7FGA0ltD9VmFw
ixxmu updated
3 years ago
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As a clinical genomics production member, I want MIP avoiding tumor samples so that I don't have to remove them from Scout
Problem:
When a customer orders MIP+Balsamic analysis but only submits o…