-
Dear authors,
currently I want to compare & test different methods for CNV-calling on spatial 10x slides. Could you please provide a simple vignette for 10x data and seurat without any additional d…
-
Hello,
I have been using Numbat for quite sometime now, and it has worked great. Recently we switched to the 5' 10X protocol. Numbat fails to correctly identify the CNVs, and in all samples i keep …
-
Hello,
I have 2 10X Genomics datasets (BCR and GEX). What are the appropriate parameters setting for TRUST4?
I'm using
f"run-trust4 -1 {f1} -2 {f2} --barcode {f1} --UMI {f1} --readFormat bc:0:15,…
-
A slack conversation led me to the realization that currently the following two functions have very different speeds.
```
function f(x, y)
return @inbounds mapreduce(==,+,x, y)
end
function…
-
I accidentally added a lot of 20mb files, 900mb total, to 10x project. (same kind as in https://github.com/slynch8/10x/issues/1883 just much more).
10x becomes unresponsive after few secs, maxing mem…
-
I noticed that file contents did not update when I changed file outside 10x and then switched focus back to 10x pane where the file was opened. There is a reload functionality in modern editors, which…
-
I noticed that the predicted hit seems to be 10x the correct amount specifically on Count Draynor in NMZ hard rumble.
- using full Dharok, equipment in SS
- actual exp amount does seem correct
- d…
-
Dear @sqjin
Hi, I'm a big fan of your program.
However, I have just two questions.
# Q1. Spot diameter
The spot diameter of 10X visium is 55um.
This is the note from 10X genomics.
"…
-
### Description
It seems our applications have seen a ~9-10x difference in their gen0 min budget leading to larger than expected P99 differences between .net 6 and .net 8.
I am reticent to attach …
-
I have a basic use case, a file containing ~88,000 geojson objects and try to insert them into a freshly spun up cockroachdb docker instance using sqlalchemy.
Notably, I’m using sqlalchemy core to …