jinworks CellChat issues

jinworks / CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

GNU General Public License v3.0

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issues

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Error in netVisual_aggregate in spatial cellchat data

#155 Jaimelan opened 1 day ago
1
Error at computeCommunProbPathway

#154 tkapello opened 1 day ago
0
so sad

#153 Huangzik opened 1 day ago
0
What Communication probability value is to be considered for a believable interaction?

#152 tumorscholar opened 6 days ago
0
Error in turning seurat into cellchat

#151 zacharyjxy2020 opened 1 week ago
0
Questions related to netVisual_bubble() in comparison analysis

#150 YizhenChen opened 1 week ago
0
p-value Distribution of Random Cell Types Peaks At Zero And Half And One

#149 DarioS opened 1 week ago
1
no scaling between heatmaps

#148 TdzBAS opened 1 week ago
0
Wrong order and color assignment between groups of conditions

#147 TdzBAS opened 1 week ago
0
Impact of Subsetting Order on CellChat Analysis

#146 amberqiong opened 1 week ago
0
Advice on normalization of individual datasets containing different cell types, pre formation of CellChat object

#145 aideenoneill opened 2 weeks ago
1
not enough space for cells at track index '1'

#144 edo98811 opened 2 weeks ago
0
Suggests to update the installation command

#143 ShixiangWang opened 2 weeks ago
0
Using statistical to analysis each signal pathway

#142 Tianyi409 opened 3 weeks ago
0
Many Interactions Between All Cell Types

#141 DarioS opened 3 weeks ago
0
Interaction between two different organs

#140 Yuwang-art opened 3 weeks ago
0
cell types are not in same order from left to right in both datasets when comparing two group of samples

#139 tumorscholar opened 4 weeks ago
2
`StackedVlnPlot` will fail if one feature has entirely non-zero expression

#138 agrier-wcm opened 4 weeks ago
1
filter the most significant ligand and receptors in netVisual_bubble

#137 synatkeamsk opened 4 weeks ago
1
netVisual_heatmap for comparison of a single pathway

#136 laijen000 opened 4 weeks ago
1
netAnalysis_signalingRole_scatter Warning

#135 winner0809 opened 4 weeks ago
1
How to customize title in netVisual_aggregate plot??

#134 winner0809 opened 1 month ago
2
wrong color showed on RankNet when plotting only one specific pathway

#133 winner0809 opened 1 month ago
2
Communication Patterns does not include all cell types

#132 ShashTrip1 opened 1 month ago
1
computeCommunProb Inconsistent Slot to createCellChat

#131 DarioS opened 1 month ago
2
Assay Parameter Ignored for SingleCellExperiment Data Object

#130 DarioS closed 1 month ago
2
Bioconductor DataFrame Not Permitted

#129 DarioS closed 1 month ago
2
Compare interactions between >2 datasets

#128 mboisvert1 opened 1 month ago
2
error in “netAnalysis_contribution”

#127 fengweimin-maker opened 1 month ago
2
10x visium spot proportion

#126 wang0430 opened 1 month ago
0
netP is empty

#125 guoxiaofa closed 1 month ago
0
if scATAC data can use cellchat?

#124 zhang-HZAU opened 1 month ago
2
meta structure for analysing multiple VISIUM datasets

#123 jvogenstahl opened 1 month ago
1
Error in subsetData

#122 mmuuyyii closed 1 month ago
1
Information flow value and weight/Interaction strength(prob value) are not the same.

#121 yaojiayingJenny opened 1 month ago
1
spatial plot to visualize communication, average position of one cluster?

#120 yaolutian closed 4 weeks ago
2
comparable L-R expression among groups but only one group showed meaningful communication of the signaling pathway chosen

#119 winner0809 opened 1 month ago
2
Hard-coded Paths in Tutorial

#118 DarioS opened 1 month ago
1
Issue with color when specifying sources and targets in RankNet function

#117 esauras opened 1 month ago
3
createCellChat: unused argument "spatial.factors" using CellChat 2.1.2

#116 AnaHowellsFerreira closed 1 month ago
2
Cannot use remove.isolate = T in netVisual_circle

#115 nsdelablancac opened 1 month ago
1
Issue with netVisual_aggregate function: end points must not be identical

#114 osemarieRy opened 1 month ago
1
Unexpected behavior with netVisual_diffInteraction

#113 DelongZHOU closed 1 month ago
2
Error in using identifyOverExpressedGenes

#112 ssruser opened 1 month ago
4
Using CellChatDB for array data

#111 ManarRashad opened 1 month ago
1
ligand-receptor interactions in bulk RNA-seq

#110 ManarRashad closed 1 month ago
0
consistent issue installing Cellchat Linux

#109 ncedi12 opened 1 month ago
1
Bug in the liftCellChat function

#108 BenJCQuah opened 1 month ago
1
Error for netVisual_chord_cell()

#107 rotavirus2019 opened 2 months ago
0
plotGeneExpression, dot plot error: Error in `levels<-`(`*tmp*`, value = as.character(levels)) : factor level is duplicated

#106 gebdu opened 2 months ago
0