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Hi,
When I tried to use LABRATsc, I used the following command:
LABRATsc.py --mode cellbycell --gff $gff_path/Sus_scrofa.Sscrofa11.1.109.chr.gff3 --alevindir $alevindir_path --conditions $condit…
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https://mp.weixin.qq.com/s/fWTX6Q3ctYFTVuIbYWFhdw
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https://mp.weixin.qq.com/s/c6h72qO9ylFdu_dBaoTvKw
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* **Terms to be merged: Provide GO ID and term label**
polynucleotide adenylyltransferase activity (GO:0004652)
RNA adenylyltransferase activity (GO:1990817)
- polynucleotide adenylyltransferas…
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I've been using mygene to query by Ensembl ID, to get the fields "name", "symbol", "summary", and "alias". After the update on October 31, this functionality seems to be broken or seriously altered fr…
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Commenting on https://github.com/geneontology/go-ontology/issues/23260
I spotted that the term
ncRNA 3' end processing
has a label change to
small regulatory ncRNA 3'-end processing
This i…
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https://mp.weixin.qq.com/s/-jrFlmy3KDol_KH3a3wlqg
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Currently the summary figure for the 5PSeq alternative polyadenylation assay has no explanation, analysis nor links to explain how it was created.
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Active CREs occurring alongside a motif differ not only between genes but also between transcript isoforms.
Alternative splicing or polyadenylation are encoded by CREs, and then affect which CREs are…
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Draft plan for QuantSeq analysis, as very briefly discussed with @daneckaw and @DimmestP on 20th May meeting.
Here is my brain dump draft of what I would like to see. Let's discuss, adjust, agree o…