-
A confusing message pops-up when attempting to load a bioimage.io model without open images.
"A RandomAccessibleInterval is required but none exist."
![bioimage_predict_noimage](https://user-image…
-
I have a model uploaded, but at `pytorch_state_dict` test it stopped with this error:
```
System.IO.IOException: No space left on device : '/home/runner/runners/2.319.1/_diag/Worker_20240829-130542-…
-
Hi all,
I am considering making a community contribution to your project if you are interested. I maintain the [Bio-image Analysis Notebooks](https://haesleinhuepf.github.io/BioImageAnalysisNoteboo…
-
It's unclear how to pass the value for `input_block_shape` in order to specify a fixed tiling shape.
The code
```python
import bioimageio.core
import imageio.v3 as imageio
from xarray import Data…
-
```
!bioimageio test affable-shark
```
Getting the following issue.
Noticed that it's because of the environment is not configured correctly, is there a universal conda env which can handle not al…
oeway updated
1 month ago
-
We use the tag categories in bioimageio.spec to generate warnings/suggestions about missing tags per category.
It would be very convenient to define these categories there to make the package more co…
-
After some preliminary discussions (with @k-dominik @Tomaz-Vieira @esgomezm @akreshuk @cfusterbarcelo and others),
it is clear that should improve the user documentation of the spec.
Concretely h…
-
Tiled prediction seems to not be implemented for v0.4 models:
```python
import bioimageio.core
import imageio.v3 as imageio
from xarray import DataArray
from bioimageio.spec.model.v0_5 import A…
-
it fails for (at least) the first two entries in https://github.com/bioimage-io/collection-bioimage-io/blob/main/rdf.yaml#L30-L48:
https://github.com/HenriquesLab/ZeroCostDL4Mic:
```
Error in ma…
-
# StarDist Fluorescence Nuclei Segmentation
Bioimage.io -- an AI model repository for deep learning.
[https://bioimage.io/?partner=ilastik&type=model&id=10.5281%2Fzenodo.6348084](https://bioimage.io…