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Hey, all.
I used jsbml-1.6.1, current latest version of jsbml, but I found the method, ASTNode.toFormula() fails to parse the formula.
To be specific, for testcase, I downloaded BIOMD0000000022.xml …
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- [ ] URLs
- ~~[ ] MIRIAM URNs for BioModels~~: removed because this is being deprecated
Implementing such tests requires intercepting HTTP requests.
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As a follow-up to #569, it's the case that several ontologies in the OLS don't use OBO PURLs, which means the automated code for constructing OLS (and BioPortal) URIs is broken.
E.g., for KISAO, th…
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Hello,
I tried to import ("File" -> "open SBML model") a curated model from Biomodels (SBML level 3 version 1) into MoBi. But opening the SBML file (sometimes) makes MoBi crash.
Curiously, this …
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## Problem Description
If we read a SBML model, from the corresponding XML file and write it back, then, if the annotation field of some component had more than one relation elements like "is" and "h…
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When you submit a kinetic model to Biomodels.net, you are supposed to indicate one or more figures from the paper that should be reproducible from the model. The manual curator assigned to your submis…
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Every biomodels that uses steady state uses the KISAO term 282 ('KINSOL'), and the checker returns this error:
NotImplementedError: Algorithm substitution for "KINSOL" (http://www.biomodels.net/ki…
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**Summary !!!**
- **BioModel Name**: Merget2013 - Mycobacterium tuberculosis permeability prediction tool
- **BioModel Tag**: Machine learning model, Ersilia
- **Metadata Comments**:
1. A…
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Here is the [discussion issue template](https://github.com/Zainab-ik/Creating-issue-templates/blob/main/.github/ISSUE_TEMPLATE/discussion.yml).
Below is a sample specific to _**eos7kpb**_
- **Bi…
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https://www.ncbi.nlm.nih.gov/pubmed/22593159
SBML: https://www.ebi.ac.uk/biomodels/BIOMD0000000463
Estimated complexity of implementation: low