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Hi!
I have an issue with loading the public dataset from Vizgen that is used in [this vignette](https://satijalab.org/seurat/articles/seurat5_spatial_vignette_2).
To give you a view of what the data…
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Hello
I am very interested in evaluating your package on human brain scRNAseq samples.
I tried it with all default (seurat object as input) but it only identifies macrophage and endothelial cells …
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In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
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Good opportunity to consider aligning our MC2 data model with parallel efforts, including those in HTAN, to adapt our data model to LinkML.
Current: csv -> jsonld
Potential: LinkML (yaml -> can be ce…
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* Name of dataset: Brain Tumor Segmentation Data
* URL of dataset: [https://ieee-dataport.org/competitions/brats-miccai-brain-tumor-dataset]
* Citation: [1] B. H. Menze, A. Jakab, S. Bauer, J. Kalpa…
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for geom brain to be released ([dev branch](https://github.com/LCBC-UiO/ggseg/tree/ggeom)), we need data merging to the atlas to work better.
currently the sf-based geom is working on a very basic…
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Currently `Brain_Data.randomise` has a naive implementation that's a bit slow and requires manually thresholding results afterwards. FSL's randomise on the other hand automatically computes TFCE maps …
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Hi scDesign3 developers,
Thank you for maintaining the amazing tool!
When I was simulating the data from https://www.10xgenomics.com/resources/datasets/mouse-brain-serial-section-2-sagittal-anter…
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In this issue, I explore how removing the brain and the brain stem improves the performance of the model for segmenting spinal lesions in MS.
The brain/brain stem were removed using the contrast a…
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