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SONGDONGYUAN1994
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scDesign3
scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
https://songdongyuan1994.github.io/scDesign3/docs/index.html
MIT License
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New Count Generation running for too long
#66
rashikajakhmola
opened
2 weeks ago
2
Copula fit takes longer time
#65
Lahiru-lsb
opened
2 weeks ago
13
Error in UseMethod("family"): no applicable method for 'family' applied to an object of class "NULL"
#64
MohammadIzadi
opened
1 month ago
1
Simulating both spatial and condition effect
#63
AlanTeoYueYang
opened
1 month ago
1
scDesign3's installation errors
#62
zhou-1314
opened
1 month ago
2
the results of fit_marginal are all null
#61
Santanevrgivup
opened
1 month ago
6
Simulate scRNA-seq data with varying number of cells and/or sequencing depth on scDesign3
#60
ShuyangNie
closed
1 month ago
2
Simulate spatial dataset with several batches
#59
VivLon
opened
2 months ago
3
Benchmarking SVG Methods: equal mean parameters
#58
kinnaryshah
closed
2 months ago
2
Copula fit not reproducible when using pbmcmapply option
#57
chrisycd
opened
2 months ago
0
Questions of gaussian family
#56
TBW108
opened
3 months ago
5
Devel
#55
SONGDONGYUAN1994
closed
4 months ago
0
Fix typos
#54
SONGDONGYUAN1994
closed
4 months ago
0
Generate new data given labels
#53
feng-bao-ucsf
opened
4 months ago
13
Fix typos
#52
rcannood
closed
4 months ago
1
Fix an error in fit_model_func function
#51
chexjiang
closed
4 months ago
0
Update devel and fix conflits
#50
SONGDONGYUAN1994
closed
5 months ago
0
Revert "Faster marginal fitting"
#49
SONGDONGYUAN1994
closed
5 months ago
0
Merge pull request #47 from SONGDONGYUAN1994/main
#48
SONGDONGYUAN1994
closed
5 months ago
0
Merge pull request #46 from SONGDONGYUAN1994/devel
#47
SONGDONGYUAN1994
closed
5 months ago
0
Faster marginal fitting
#46
SONGDONGYUAN1994
closed
5 months ago
0
Add edf flexible fitting for fit_marginal
#45
chexjiang
closed
5 months ago
0
Error when running example
#44
yiranzhimo
closed
5 months ago
2
Howt to generate spatially invariant genes
#43
rocketeer1998
closed
6 months ago
5
Merge from main
#42
SONGDONGYUAN1994
closed
6 months ago
0
Simulation from bulk RNA-seq
#41
zji90
closed
6 months ago
2
Merge pull request #39 from SONGDONGYUAN1994/main
#40
SONGDONGYUAN1994
closed
7 months ago
0
Merge main
#39
SONGDONGYUAN1994
closed
7 months ago
0
Merge pull request #37 from SONGDONGYUAN1994/main
#38
SONGDONGYUAN1994
closed
7 months ago
0
Merge pull request #36 from SONGDONGYUAN1994/devel
#37
SONGDONGYUAN1994
closed
7 months ago
0
Devel
#36
SONGDONGYUAN1994
closed
7 months ago
0
revise typos
#35
chexjiang
closed
7 months ago
0
revise typo
#34
chexjiang
closed
7 months ago
0
Merge devel
#33
SONGDONGYUAN1994
closed
7 months ago
0
update sparse_cov.R function
#32
chexjiang
closed
7 months ago
0
Fixed default params for spatial and pseudotime
#31
CalvinLeeUBIC
closed
8 months ago
0
BiocParallel error in Simulate spot-resolution spatial data for cell-type deconvolution
#30
RadishTheVeggie
opened
9 months ago
1
mc.cores > 1 not supported on windows
#29
lucas02061
opened
9 months ago
2
Merge pull request #27 from SONGDONGYUAN1994/devel
#28
SONGDONGYUAN1994
closed
10 months ago
0
Merge pull request #26 from SONGDONGYUAN1994/main
#27
SONGDONGYUAN1994
closed
10 months ago
0
Merge main
#26
SONGDONGYUAN1994
closed
10 months ago
0
Release 3 18
#25
SONGDONGYUAN1994
closed
10 months ago
0
Can we use total gene single cell data to generate the simulated spatial data
#24
xiangpin
opened
10 months ago
1
A question about simulating multi-omic data from single-omic data
#23
HelloWorldLTY
opened
10 months ago
2
Long runtime for simulating spatial data
#22
yollct
opened
11 months ago
14
GAMLSS warnings during marginal fitting
#21
cpuritz
closed
11 months ago
2
Error when setting `ncell` with a continuous convariate
#20
lazappi
closed
10 months ago
1
Error when simulating batch effects and library size
#19
lazappi
closed
1 year ago
2
Best way to simulate noise
#18
Zethson
closed
1 year ago
2
Question on setting batch effect strength
#17
XiaPoppy
opened
1 year ago
1
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