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SONGDONGYUAN1994
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scDesign3
scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
https://songdongyuan1994.github.io/scDesign3/docs/index.html
MIT License
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Questions of gaussian family
#56
TBW108
opened
1 month ago
4
Devel
#55
SONGDONGYUAN1994
closed
1 month ago
0
Fix typos
#54
SONGDONGYUAN1994
closed
1 month ago
0
Generate new data given labels
#53
feng-bao-ucsf
opened
1 month ago
13
Fix typos
#52
rcannood
closed
1 month ago
1
Fix an error in fit_model_func function
#51
chexjiang
closed
2 months ago
0
Update devel and fix conflits
#50
SONGDONGYUAN1994
closed
2 months ago
0
Revert "Faster marginal fitting"
#49
SONGDONGYUAN1994
closed
2 months ago
0
Merge pull request #47 from SONGDONGYUAN1994/main
#48
SONGDONGYUAN1994
closed
2 months ago
0
Merge pull request #46 from SONGDONGYUAN1994/devel
#47
SONGDONGYUAN1994
closed
2 months ago
0
Faster marginal fitting
#46
SONGDONGYUAN1994
closed
2 months ago
0
Add edf flexible fitting for fit_marginal
#45
chexjiang
closed
2 months ago
0
Error when running example
#44
yiranzhimo
closed
2 months ago
2
Howt to generate spatially invariant genes
#43
rocketeer1998
closed
3 months ago
5
Merge from main
#42
SONGDONGYUAN1994
closed
4 months ago
0
Simulation from bulk RNA-seq
#41
zji90
closed
4 months ago
2
Merge pull request #39 from SONGDONGYUAN1994/main
#40
SONGDONGYUAN1994
closed
4 months ago
0
Merge main
#39
SONGDONGYUAN1994
closed
4 months ago
0
Merge pull request #37 from SONGDONGYUAN1994/main
#38
SONGDONGYUAN1994
closed
4 months ago
0
Merge pull request #36 from SONGDONGYUAN1994/devel
#37
SONGDONGYUAN1994
closed
4 months ago
0
Devel
#36
SONGDONGYUAN1994
closed
4 months ago
0
revise typos
#35
chexjiang
closed
4 months ago
0
revise typo
#34
chexjiang
closed
4 months ago
0
Merge devel
#33
SONGDONGYUAN1994
closed
4 months ago
0
update sparse_cov.R function
#32
chexjiang
closed
4 months ago
0
Fixed default params for spatial and pseudotime
#31
CalvinLeeUBIC
closed
5 months ago
0
BiocParallel error in Simulate spot-resolution spatial data for cell-type deconvolution
#30
RadishTheVeggie
opened
6 months ago
1
mc.cores > 1 not supported on windows
#29
lucas02061
opened
6 months ago
2
Merge pull request #27 from SONGDONGYUAN1994/devel
#28
SONGDONGYUAN1994
closed
7 months ago
0
Merge pull request #26 from SONGDONGYUAN1994/main
#27
SONGDONGYUAN1994
closed
7 months ago
0
Merge main
#26
SONGDONGYUAN1994
closed
7 months ago
0
Release 3 18
#25
SONGDONGYUAN1994
closed
7 months ago
0
Can we use total gene single cell data to generate the simulated spatial data
#24
xiangpin
opened
8 months ago
1
A question about simulating multi-omic data from single-omic data
#23
HelloWorldLTY
opened
8 months ago
2
Long runtime for simulating spatial data
#22
yollct
opened
8 months ago
12
GAMLSS warnings during marginal fitting
#21
cpuritz
closed
9 months ago
2
Error when setting `ncell` with a continuous convariate
#20
lazappi
closed
7 months ago
1
Error when simulating batch effects and library size
#19
lazappi
closed
10 months ago
2
Best way to simulate noise
#18
Zethson
closed
11 months ago
2
Question on setting batch effect strength
#17
XiaPoppy
opened
1 year ago
1
possibility to know the cell type if I manually set the ncell parameter
#16
XiaPoppy
closed
1 year ago
2
Error in as.data.frame.default(x[[i]], optional = TRUE)
#15
Dana162001
closed
1 year ago
5
Totally SAME count matrix(generated) compared to the reference data
#14
XiaPoppy
closed
1 year ago
4
Error when simulating spatial transcriptomics data for benchmarking DE genes
#13
ttgump
closed
7 months ago
1
A bug existing in the example code
#12
HelloWorldLTY
closed
1 year ago
2
attempt to set an attribute on NULL error when running scdesign3()
#11
XiaPoppy
closed
1 year ago
7
no applicable method for 'family' applied to an object of class "NULL"
#10
minghong
closed
1 year ago
6
Error while simulating spot-resolution spatial data for cell-type deconvolution
#9
sumeer1
closed
1 year ago
1
Simulate batch effect and condition effect simutaneously.
#8
yujias424
opened
1 year ago
3
Issue with adjusting for library size
#7
emucaki
closed
1 year ago
3
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