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Could you please provide more details on generating TCGA datasets?
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**Describe the bug**
It has been identified that a certain drug/target connection is missing from the literature dataset. This ([32955176](https://europepmc.org/article/MED/32955176)) EuroPMC paper…
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In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
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```python
import pandas as pd
import lazyslide as zs
# Slide metadata
metadata = pd.DataFrame({
"slide": ["slide1", "slide2", "slide3"],
"class": ["cancer", "normal", "cancer"]
})
…
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Reviewed Medical Image Datasets:
1. NIH Clinical Center:
Chest X-Ray Dataset (ChestX-ray8): Contains over 100,000 frontal-view X-ray images of 30,805 unique patients with 14
disease labels…
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Data (both real and simulated) are not accessible from the attached hyperlinked Google Drive link mentioned at
https://github.com/algo-cancer/PhyloM/tree/master/Data
The following mentioned googl…
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I only did a very quick and sparse spot check and found a lot of issues with the oncomx data. This dataset is going to need a thorough check row by row because I found multiple issues.
Multiple iss…
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A1BG_cross = ov.multi_join({"umich proteomics": "A1BG", "bcm transcriptomics": "A1BG"})
Trace
AttributeError Traceback (most recent call last)
Cell In[17], [line 1](vsc…
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Hey! I am going to train sybil on a subset of NLST dataset. I have the metadata and annotations json files.
What is the step by step process of Training Sybil?
I tried to run the train.py file…
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Dear Bryan He,
Thank you very much for your great model ST-Net.
I would like to use your model with the dataset which you used in your paper.
But, I could not find it in the web site.
https://ww…