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rendeirolab
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LazySlide
Modularized and scalable whole slide image analysis
https://lazyslide.rtfd.io/
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Progress bar for remote WSIs miscalculating file size and download rate
#43
afrendeiro
closed
1 month ago
1
Design of WSI data structure
#42
Mr-Milk
closed
1 month ago
3
[New Feaeture] Support Multi-Devices inference for `tl.feature_extraction`
#41
Mr-Milk
opened
2 months ago
0
Fix #39: add dynamic versioning with versioningit
#40
afrendeiro
closed
2 months ago
0
Installation and versioning
#39
afrendeiro
closed
2 months ago
1
[New Feature] Aggregation of multiple slides
#38
Mr-Milk
opened
3 months ago
3
Slide-level analysis demo
#37
afrendeiro
opened
4 months ago
0
Processing pipeline
#36
afrendeiro
opened
4 months ago
0
Failing annotation of tiles with text features
#35
afrendeiro
opened
4 months ago
0
Normalization of tiles and scaling of features extracted
#34
afrendeiro
closed
4 months ago
1
[Docs] Improve darkmode code cell visibility
#33
afrendeiro
closed
1 month ago
1
[CLI] `typer` dependency missing for CLI use
#32
afrendeiro
closed
4 months ago
0
Rename `master` branch to `main`
#31
afrendeiro
closed
5 months ago
0
[Container] A docker image to launch lazyslide
#30
Mr-Milk
opened
5 months ago
0
[CLI] A CLI interface to launch lazyslide
#29
Mr-Milk
opened
5 months ago
0
[Workflow] A nextflow script to process multiple slides
#28
Mr-Milk
opened
5 months ago
0
Tests
#27
Mr-Milk
opened
5 months ago
0
Documentation
#26
Mr-Milk
opened
5 months ago
0
[Tool] Cell segmentation
#25
Mr-Milk
opened
5 months ago
1
Torch DataLoaders
#24
Mr-Milk
opened
5 months ago
0
[Tool] Color normalization
#23
Mr-Milk
closed
4 months ago
0
[get] Get tissue masks/contours
#22
Mr-Milk
closed
4 months ago
0
[Tool] Quantify geometry features for tissue instances
#21
Mr-Milk
closed
5 months ago
0
[Tool] User model for feature extration
#20
Mr-Milk
closed
4 months ago
0
[Tool] New Scorers
#19
Mr-Milk
opened
5 months ago
0
[IO] Handle spatialdata writing for user
#18
Mr-Milk
closed
1 month ago
1
[IO] Support for remote WSI
#17
Mr-Milk
closed
4 months ago
0
Add scorer feature
#16
Mr-Milk
closed
4 months ago
0
Plotting rendering improvement with `QuadMesh`
#15
Mr-Milk
closed
9 months ago
0
Tile Table
#14
Mr-Milk
closed
9 months ago
0
Cell/ nucleus image cropping
#13
eabila
closed
4 months ago
1
Eager import only for main features
#12
Mr-Milk
closed
10 months ago
0
Random shuffling tiles_coords
#11
eabila
closed
10 months ago
0
Lazy read coordinations in H5
#10
Mr-Milk
closed
11 months ago
1
Speed benchmark
#9
afrendeiro
closed
4 months ago
0
[Backend:vips] Faster random access of small tiles using fetch
#8
Mr-Milk
closed
10 months ago
0
Code style
#7
afrendeiro
closed
10 months ago
2
Add wsi.to_dataset(); Add wsi.to_dataloader; Add wsi.inference() prototypes
#6
afrendeiro
opened
11 months ago
0
Bug using openslide backend
#5
afrendeiro
closed
11 months ago
0
Error creating Dataset without segmenting tissue and tiling WSI
#4
afrendeiro
closed
10 months ago
0
Error creating tiles without specifying mpp
#3
afrendeiro
closed
10 months ago
0
Add convenience functions to create Torch objects from WSI directly
#2
afrendeiro
closed
4 months ago
0
Allow WSI to be instantiated from a URL
#1
afrendeiro
closed
10 months ago
0