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case 1 :
Unknown option: --
usage: /home/gitpod/.pyenv/versions/2.7.17/bin/python [option] ... [-c cmd | -m mod | file | -] [arg] ...
Try `python -h' for more information.
Need: python3
I am tr…
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Hi there,
I'm not sure if raising an issue here is the best way to reach out for my question but here it is:
I'm planning to do a research on NN rule extraction focusing Alpha Fold's performance o…
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@Augustin-Zidek given the massive advancements in AlphaFold 2 making AlphaFoldv1 from CASP13 obsolete, are there plans to release the rest of the AlphaFoldv1 pipeline? As this still would be good for …
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Hi, I'm a beginner trying to get AlphaFold to work in Windows 10.
I have WSL enabled and Ubuntu installed.
I tried to run the script with the requirements, and ran into problems, so I installed ea…
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Hey!
First of, I'm a newbie. And while alphafold_casp13 was running on my Linux, I was wondering if I could do that on Windows as well.
If yes, what changes do I have to do on the source files. Is…
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How can you obtain the final (folded) protein 3D structure from the distance map/distogram? In the README it says:
> pasted/: Contains distograms obtained from the ensembled distograms by pasting.…
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Good Afternoon. I'm a biochem student doing some remote research while in quarantine. My prof suggested I use deepmind to study some proteins. I've been going to the process but I'm running into error…
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Hi,
It's just a notice.
I have just tried ProtBert to predict protein distance map. It works pretty well.
https://github.com/akirasosa/bert-fold
Thanks for the repo!
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Hi,
I'm a post-doc from Fudan university, China. I have just read your paper "SAINT: Self-Attention Augmented Inception-Inside-Inception Network Improves Protein Secondary Structure Prediction", wh…
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The shape of PSSM generated by PSI-BLAST with BLOUM62 is (NR, 20), there is no X and gap lines. How could you get the shape with (NR, 21) and (NR,22)?