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ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
Academic Free License v3.0
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link for downloading ProtElektra does not work
#159
aryankeluskar
opened
1 week ago
0
T5 fine-tuning special tokens
#158
tombosc
opened
3 weeks ago
2
Missing `example_seqs.fasta` file in the Colab example
#157
zt20001126
opened
1 month ago
2
Prediction meanings
#156
lhkhiem28
opened
2 months ago
1
Error while saving the fine-tuned model
#155
Chinjuj2017
closed
2 months ago
2
About prot_t5
#154
yelou2022
closed
2 months ago
2
PT5_LoRA_Finetuning_per_prot.ipynb - memory accumulation during validation
#153
Fredditeddy
opened
4 months ago
1
IndexError in generate protein notebook
#152
ekiefl
opened
5 months ago
3
What was the pretraining split for the ProtT5-UniRef50 model?
#151
speydril
opened
5 months ago
1
What is the `./protT5` directory in the Colab example?
#150
ekiefl
closed
5 months ago
4
Feature order
#149
abelavit
closed
4 months ago
2
How was ProtT5 trained?
#148
Sspandau
closed
4 months ago
1
ProtT5 model generate
#147
BSharmi
opened
7 months ago
2
Generating embedding from finetuned model
#146
abelavit
opened
8 months ago
3
Issue running PT5_LoRA_Finetuning_per_residue_reg.ipynb
#145
abelavit
closed
8 months ago
3
(Question) Can I use this for protein homology to UniRef50?
#144
jolespin
opened
8 months ago
2
Error while running Finetuning script
#143
suresh-pokharel
closed
8 months ago
2
per_residue and per_protein embedding comparison
#142
madnessfish
closed
9 months ago
2
Link to finetune colab and license info
#141
RSchmirler
closed
9 months ago
0
Added link to Colab version
#140
RSchmirler
closed
9 months ago
0
Fix full precision casting on cpu
#139
li-yq
closed
10 months ago
1
Mixed-precision and Preprint link
#138
RSchmirler
closed
11 months ago
0
Formatting for ProtT5 labels
#137
exs-fdreyer
closed
1 year ago
1
Fine tuning with Lora on multi GPU
#136
BSharmi
closed
1 year ago
2
Fine-tuning smaller models in half-precision
#135
pawel-rezo
closed
1 year ago
2
Error in Generation of Embeddings from list of sequences via ProtT5
#134
amalislam675
opened
1 year ago
5
Error for fine tuning T5: ModuleNotFoundError: No module named 'mpi4py'
#133
yzhang-github-pub
closed
1 year ago
9
Added LoRA per residue regression
#132
RSchmirler
closed
1 year ago
0
Tokenising multi-chain proteins
#131
exs-hkenlay
closed
1 year ago
2
RuntimeError: "addmm_impl_cpu_" not implemented for 'Half'
#130
Mjvolk3
closed
1 year ago
2
Sequence extraction from embedding representation
#129
IliasGewr
closed
1 year ago
1
Fix quick start
#128
mheinzinger
closed
1 year ago
0
Improvements on Quick Start in README
#127
delta2323
closed
1 year ago
1
Gene Ontology (GO) prediction
#126
JNU-luyi
closed
1 year ago
3
New364 dataset
#125
SamarthGarg09
closed
1 year ago
1
Adding LoRA Finetuning Notebooks
#124
RSchmirler
closed
1 year ago
0
Sequence processing
#123
BSharmi
closed
1 year ago
6
Availability of Seq2Seq Autoencoder Models for Protein Sequences
#122
khokao
closed
1 year ago
2
OSError: Can't load tokenizer for 'Rostlab/prot_t5_xl_uniref50'
#121
moonhuwaa
closed
1 year ago
2
Speed up via xformers
#120
mortonjt
opened
1 year ago
6
Training a T5 tokenizer
#119
ideasbyjin
closed
1 year ago
5
I want the prottrans training code.
#118
miderxi
closed
1 year ago
15
Fine-Tune T5 for Residue Classification
#117
MoaazK
closed
1 year ago
1
Multi-Mask Inference in ProtBert via HF Pipeline Function
#116
gundalav
closed
1 year ago
1
Sanity check of inputs
#115
BSharmi
closed
1 year ago
3
Sanity check of data processing
#114
BSharmi
closed
1 year ago
1
Finetuning ProtT5
#113
BSharmi
closed
1 year ago
7
Can we use ProtBert to fine-tune masking language model? (inquiry to memory friendly pretrained model)
#112
gundalav
closed
1 year ago
23
How to Fine-tune Rostlab/prot_t5_xl_uniref50 Model for Sequence Generation
#111
gundalav
closed
1 year ago
5
ZeroDivisionError when running prott5_embedder.py
#110
wojciech-galan
closed
1 year ago
3
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