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Dear Developer,
Thank you for creating such a useful tool.
I encountered some issues while using the ESAI_calculator function. Initially, I performed sEV_recognizer with multiple samples using t…
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Hi, Dr. Liu,
I was wondering could you share the final adult atlas? since the cell barcode, UMI, and tissue barcode lie in your barcode file and I don't know their locations.
Best wishes,
Yuanzhen
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We are trying to demultiplex our samples using Cite-seq but we are getting low overlap between cell barcodes and hashtag barcodes. We used the same pipeline on our previous experiment and didn't have…
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Hi @haowenz,
I tend to not force use of the 10X barcode include-list since it is possible there could be valuable information/real cells, but I noticed that some scATACseq data processed via `chromap…
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From Parisa Nejad's [current metadata](https://docs.google.com/spreadsheets/d/1coPpOVZRhBVRxGBfDCxr6-6nG-nP7Sb1JXk-vdtzXO8/edit#gid=136855131) spreadsheet:
- Possible duplicated values are color-code…
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Hi, I'm trying to run SPLASH on my single cell data, and is it possible to run SPLASH by feeding a bam file with barcode-cell type annotation? I'm currently extracting read names from my bam file and …
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pbmcs
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Thank you for making this data available.
I have stumbled upon an unexpected behavior: for the organ "blood", the cell labels provided do not fit the clusters as seen on a UMAP:
[
![label_umap]…
goepp updated
3 weeks ago
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### Project short name:
MyocardialInfarctionAmruteCITE
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/12Lw3o…
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I'm trying to get the variants for each cell in my data, but I see that barcodes are not in the vcf file produced. Is there a way to match the variants with the barcodes?