wheaton5 souporcell issues

wheaton5 / souporcell

Clustering scRNAseq by genotypes

MIT License

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issues

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errors with pystan and consensus.py

#246 kkarlins opened 1 month ago
0
souporcell.py can't find tensorflow

#245 jrkirk61 closed 2 months ago
5
Remove *sklearn* from env YAML already provided by *scikit-learn*

#244 paulmenzel closed 3 months ago
2
Error running /opt/souporcell/consensus.py

#243 fningtian closed 3 months ago
14
Rename of Singularity to Apptainer causes confusion

#242 paulmenzel closed 3 months ago
8
Interpretation of Clustering Results and PCA Analysis in Souporcell

#241 lllifan opened 3 months ago
1
Need help separating fetal from maternal cells in placenta

#240 bkheira opened 3 months ago
3
Hosting Singularity image on Sylabs?

#238 Sxmple-DavidSchmidt closed 4 months ago
2
shared_samples.py error "vcf1 is not defined."

#237 MPetershack closed 4 months ago
1
vcf file wget command does not bypass google drive virus scanning

#236 EDePasquale opened 5 months ago
2
Re-enable custom cell barcode support

#235 mschilli87 opened 5 months ago
0
Ambiguous sample labeling for some souporcell clusters

#234 aranham opened 6 months ago
1
How to obtain the counts matrix with ambient RNA removed?

#233 wangdlpbr opened 6 months ago
5
Running souporcell across multiple samples

#232 samfenske closed 7 months ago
2
doublet detection errors with troublet: non-zero exit status and index out of bounds

#231 shirshuj opened 7 months ago
13
Licensed conda channels

#230 trum994 opened 7 months ago
2
Dependencies and Conda Environment Difficulties

#229 ggruenhagen3 closed 7 months ago
0
Matching cluster label to origin sample id

#228 elemesemele opened 7 months ago
3
Fix Singularity Definition File Error & Update the README File

#227 rezabehboudi closed 5 months ago
0
No doublet output = 0 doublets?

#226 bpyenson opened 8 months ago
1
freebayes subprocess terminated error

#225 Huimin721 opened 8 months ago
1
Differentiation of maternal and fetal sources

#224 Jylab-Genetics opened 8 months ago
0
Souporcell running w/ aneuploidy sample

#223 hypaik opened 8 months ago
6
Barcodes displayed in github page text not found in souporcell test output

#222 No2Ross opened 8 months ago
0
souporcells runs without common variants but when I add the VCF file it breaks

#221 Ahmedalaraby20 opened 8 months ago
0
beta-binomial

#220 rezabehboudi opened 9 months ago
0
vartrix error

#219 liym0758 opened 9 months ago
0
Recommended RAM and # of threads?

#218 carmensandoval closed 10 months ago
2
How to calculate likehood （Unknown number of mixed samples split）

#217 licongge opened 10 months ago
6
GPU_accelerator

#216 zheng-sc opened 10 months ago
9
Understanding the barcodes command

#215 Thapeachydude opened 11 months ago
1
Would using a filtered VCF based on T and E values result in more accurate results?

#214 G3N0M3 closed 11 months ago
2
Error occured in clustering step

#213 ilovegreentea closed 6 months ago
0
troublet command error

#212 zchatt opened 1 year ago
7
long run time of cluster step on big datasets

#211 zheng-sc closed 1 year ago
1
sparse mixture model clustering result

#210 Huimin721 opened 1 year ago
5
Singularity Image is broken

#209 SimonDMurray opened 1 year ago
3
Can I use one vcf to identify two clusters?

#208 xxl619755841 closed 1 year ago
4
barcodes, cell counts in clusters.tsv

#207 aranham closed 6 months ago
2
clustering plot (Figure 1e)

#206 daccachejoe opened 1 year ago
6
Error occurred when running souporcell.

#205 xliu-ucas opened 1 year ago
1
Update the parameters of freebayes in step 2

#204 TheLZY closed 11 months ago
0
Unexpected Cell Distribution in Long-Term Transplanted Sample

#203 yangchao4 opened 1 year ago
7
Keep error logs

#202 johnyaku opened 1 year ago
6
FATAL: container creation failed

#201 ramadatta opened 1 year ago
0
Freebays limit-coverage vs skip-coverage

#200 abmarstrand closed 1 year ago
2
Error: bcftools sort returned non-zero exit status 255

#199 carmensandoval closed 1 year ago
24
--common_variants parameter compatibility

#198 carmensandoval opened 1 year ago
1
Recommendations for SNP array or WGS

#197 daccachejoe opened 1 year ago
6
shared_samples.py interpretation

#196 jordanchervin opened 1 year ago
0