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The CWL specification for CommandLineTools and Workflows says that implementations need to understand include and import ( http://www.commonwl.org/v1.0/Workflow.html#Document_preprocessing , http://ww…
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- Given #363 and #, we could had Weaver as an official CWL implementation:
* https://www.commonwl.org/#Implementations
* https://groups.google.com/g/common-workflow-language/c/Dn73A6eBv7Q/m/AmeUm…
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http://www.commonwl.org/v1.0/Workflow.html#ScatterMethod
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Based on the Task Execution Schema [spec](https://github.com/ga4gh/task-execution-schemas) by GA4GH.
Leftover items for initial version:
- [x] Include in build (`backend.tes.url` config var)
- …
ghost updated
7 years ago
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Create CommonWL "tool" interfaces for each CNVkit sub-command. Try to use these to improve integration with Galaxy and bcbio-nextgen.
Maybe wrap "batch" as a workflow instead of a tool -- not sure ho…
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Hello, are there any plans to import and/or export workflows written in the Common Workflow Language standards?
https://www.commonwl.org
https://cacm.acm.org/magazines/2022/6/261172-methods-incl…
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As described here;
https://www.commonwl.org/v1.0/CommandLineTool.html#SchemaDefRequirement
https://www.commonwl.org/user_guide/19-custom-types/index.html
Right now only `record` and `enum` c…
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Would need to download a file from a so-called "[Internationalized domain name](https://en.wikipedia.org/wiki/Internationalized_domain_name)"
Test with and without the punycode version.
Example:…
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http://www.commonwl.org/v1.0/CommandLineTool.html#CommandInputRecordSchema
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CWL 1.0 lets you do something like:
```yaml
outputs:
an_output_name:
type: stdout
stdout: a_stdout_file
```
Which is much more concise than
```yaml
outputs:
an_output_name:
…