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Thank you for sharing this great code.
I have used infovae as a subsitute of beta-vae and traditional vae (beta=1).
However, I think that your vq-vae-2 better reconstructs images.
Unfortunately…
kimdn updated
4 years ago
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Hi Kiarash,
Can you provide a suggestion on which volume to use for ModelAngelo? My results vary when using maps from a refinement job (I’m using CS), a post phenix Resolve CryoEM job, and a post…
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Add amplitude/contrast correction method from Yunpeng to cov 2d code.
https://github.com/yunpeng-shi/fast-cryoEM-PCA/blob/main/fast_cryo_pca.py#L862
Ostensibly, there are two distinct outputs we pr…
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Hi Charles, I watched your 4 Wiggle tutorial videos. Fantastic! You are joking about combining efforts, my own ChimeraX cryoDRGN viewer prototype hardly does anything while Wiggle is ready for use. …
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What license should we use for the OSC-EM schemas?
There are three components here to keep separate:
- The **datasets** themselves, including data and OSCEM-format metadata files. This can be cust…
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I am trying to get some predictions of protein-protein complexes.
As "positive" control, I use prediction for a complex for which the cryoEM structure was solved and published in second half of 2022.…
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Hello,
I was just running through the tutorial data for running emap2sec and I see that there is a discrepancy between documentation online and the tutorial with the actual code. It appears your co…
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@uermel suggested:
- change label colors so they are more distinct and better suited for cryoEM data
- use Lorenzo's label interpolator
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The following simple code fails with the error in the title:
```python
from libpyUtils2 import EMUtil
res = EMUtil.get_image_count("stack2.hdf")
```
stack2.hdf exists, and I have RW permissio…
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I downloaded some FFHQ images from
https://drive.google.com/drive/folders/1tZUcXDBeOibC6jcMCtgRRz67pzrAHeHL
Then, I ran
python /people/kimd999/script/python/cryoEM/vq-vae-2-pytorch/train_vqvae.py…
kimdn updated
4 years ago