3dem model-angelo issues

3dem / model-angelo

Automatic atomic model building program for cryo-EM maps

MIT License

110 stars 18 forks source link

issues

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some ideas

#109 DmitrySemchonok opened 2 weeks ago
1
error when using maps coming from flexibility analyses protocols

#108 CPM46 closed 1 month ago
2
shape '[5, 20]' is invalid for input of size 20

#107 akashrajaram1 opened 1 month ago
1
ModelAngelo fails when using fasta files

#106 ezbie opened 1 month ago
1
About the training data

#105 Qmi3 opened 2 months ago
0
UserWarning: Applied workaround for CuDNN issue, install nvrtc.so

#104 arr0i3 opened 2 months ago
0
Default config.json Issue

#103 MXXXZ opened 3 months ago
0
Output cleaned fasta files to output folder instead of input folder

#102 the-lay opened 4 months ago
0
ModelAngelo on Mac M1 or M2 (no Nvidia GPU)?

#101 jelegheert opened 4 months ago
0
running -c with custom config.json. Only want to change threshold but more arguments need defining

#100 fergusonscripps opened 4 months ago
2
Include undetermined amino acids and handle gaps

#99 hnguyentt opened 4 months ago
0
Make fasta file from best_hits file

#98 jamaliki opened 4 months ago
0
Chain and residue numbering issues

#97 ccgauvin94 opened 5 months ago
4
shell closes when running install script

#96 gregdp opened 5 months ago
3
config.json file

#95 chenwei-zhang opened 5 months ago
3
CUDA out of memory

#94 reorocha opened 6 months ago
0
Update install_script.sh

#93 jowodo closed 6 months ago
0
Jamaliki patch 1

#92 jamaliki closed 7 months ago
0
Small bug with hmm files names.

#91 reorocha closed 7 months ago
4
Fix numbering and sort best_hits

#90 jamaliki closed 7 months ago
0
install_script.sh adaption for variable environment

#89 jowodo closed 7 months ago
1
Install script.sh

#88 jowodo closed 7 months ago
1
add __init__ files

#87 AssmannG closed 7 months ago
4
Question about the paper

#86 ChenShengsGitHub closed 7 months ago
3
Fix more bugs for very small structures

#85 jamaliki closed 8 months ago
0
Fix for issue #83

#84 jamaliki closed 8 months ago
0
Infinite stop on very small targets

#83 wang3702 closed 8 months ago
6
Sjors suggestions

#82 jamaliki closed 8 months ago
0
Checksum of downloaded file .../.../nucleotides_no_seq.zip does not match expected checksum.

#81 t00shadow closed 8 months ago
19
Update README.md

#80 jamaliki closed 8 months ago
0
Update

#79 jamaliki closed 8 months ago
0
cuda not recognized

#78 davidhoover opened 8 months ago
4
Can not handle map with nxstart/nystart/nzstart!=0

#77 wang3702 opened 9 months ago
3
WIP: Fix issues with esm model loading

#76 jamaliki closed 9 months ago
0
model-angelo failed on big target

#75 wang3702 closed 9 months ago
3
Pipeline control

#74 jamaliki closed 9 months ago
0
1.0.3 install errors

#73 davidhoover closed 8 months ago
9
Fix conda installation issues

#72 jamaliki closed 9 months ago
0
Better error message when no Ca atoms found

#71 jamaliki closed 9 months ago
0
Mmcifio fix

#70 jamaliki closed 9 months ago
0
Make better error message when no Ca's found

#69 jamaliki closed 9 months ago
0
Model Angelo crashes after first round

#68 cyntiaT closed 9 months ago
3
Revert "Fix for issue #51"

#67 jamaliki closed 10 months ago
0
Build ends in error when using ModelAngelo 1.0.1

#66 Appoota opened 10 months ago
4
Model editing on coot

#65 say-00 closed 10 months ago
3
Fix for issue #49

#64 jamaliki opened 10 months ago
0
Fix for issue #51

#63 jamaliki closed 10 months ago
1
Fix for issue #51

#62 jamaliki closed 10 months ago
0
WIP: Getting cleaner and less error prone HMM parsing ready

#61 jamaliki closed 8 months ago
4
cuda issues

#60 DerLorenz closed 11 months ago
9