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3dem
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model-angelo
Automatic atomic model building program for cryo-EM maps
MIT License
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When I try to download weights, my program crashes
#59
aditya655
closed
11 months ago
4
ModelAngelo v1.0.1 stopped after predicting Cα
#58
yanjuisheng
closed
11 months ago
2
Build with fasta crashes after completing 1st GNN round
#57
Rafael-Ayala
closed
7 months ago
3
Model_Angelo build
#56
TingyuHan0367
closed
7 months ago
6
Fixed a typo in help message
#55
Guillawme
closed
1 year ago
1
Refinement or Post-Process Maps
#54
mjaremko
opened
1 year ago
1
Modelangelo v1.0.1 failing if the fasta contains unknown residues "X"
#53
sroet
opened
1 year ago
4
UnboundLocalError: local variable 'grid_np' referenced before assignment
#52
rdrighetto
closed
1 year ago
3
Incorrect _label_seq_id numbering
#51
tristanic
closed
10 months ago
10
Dependency resolution issues on fresh install
#50
tristanic
opened
1 year ago
3
Issue with refine module
#49
pporwal015
opened
1 year ago
12
RNA only does not run
#48
mcianfrocco
opened
1 year ago
1
RuntimeError: shape '[16, 20]' is invalid for input of size 240
#47
ricosuavee
opened
1 year ago
1
Use canonical pyHMMER way to make HMM files
#46
jamaliki
opened
1 year ago
0
local variable 'grid_np' referenced before assignment - model_angelo/c_alpha/inference.py
#45
DHouldershaw
closed
1 year ago
1
V1.0 stops after first refinement iteration
#44
rfronzes
closed
1 year ago
18
ModelAngelo 1.0
#43
jamaliki
closed
1 year ago
0
how to skip original.zip Downloading
#42
wh277
closed
1 year ago
2
Issue using model-angelo on mac with Apple M2 chip
#41
Jurtel
opened
1 year ago
7
Divide by zero error
#40
rshek351
closed
1 year ago
3
a weird problem "class 'urllib.error.URLError'"
#39
ning-2022
opened
1 year ago
8
numpy 1.24 no attribute int
#38
jowodo
closed
1 year ago
2
Assertion Error: standardize_mrc did not get any inputs
#37
Srichnew
closed
1 year ago
6
Modelangelo eval_per_resid | Attribute Error
#36
jacob-r-anderson
closed
1 year ago
2
ModelAngelo output is the wrong or incomplet sequence
#35
gilcantero
opened
1 year ago
7
The output.cif is in wrong protein sequence
#34
helloworldtjj
opened
1 year ago
1
error in running model-angelo.
#33
jiangq9992003
closed
1 year ago
7
GNN model refinement problem _ SBGrid and cluster
#32
BaudaE
opened
1 year ago
3
Very slow weights download speed
#31
dzyla
opened
1 year ago
1
Error after Initial C-alpha prediction
#30
lstyp
closed
1 year ago
2
Run extremely slow on 1080Ti
#29
vamseedharr
opened
1 year ago
15
ModelAngelo failed with ValueError
#28
lipan6461188
closed
1 year ago
2
key error
#27
xuewuzhang-UTSW
closed
1 year ago
2
Zero pad grid inputs smaller than 64
#26
jamaliki
opened
1 year ago
0
install issue for windows
#25
lockye6
closed
1 year ago
2
ModelAngelo not using GPUs (2080 Ti, CUDA 11.4)
#24
marinegor
opened
1 year ago
22
Some questions about format of Input
#23
zhihao-2022
opened
1 year ago
9
Successful? model build (output.cif written) despite run ending in error
#22
fjkoh
opened
1 year ago
6
the model is shown as lines; IndexError: arrays used as indices must be of integer (or boolean) type
#21
DmitrySemchonok
closed
1 year ago
2
Cuda - the memory issue
#20
DmitrySemchonok
closed
1 year ago
6
Did not download weights because the flag -w or --download-weights was not specified
#19
Henry-946
closed
1 year ago
2
Issue with RTX3080
#18
mbelouso
opened
1 year ago
4
GNN model ref failed
#17
TRAP-man
closed
1 year ago
4
Return error exit code
#16
pconesa
closed
1 year ago
9
RuntimeError: CUDA out of memory. Can it be avoided, at least for tests
#15
pconesa
closed
1 year ago
2
What would be the recomended way to update model angelo
#14
pconesa
closed
1 year ago
7
Is there a mismatch in the names when downloading models?
#13
pconesa
closed
1 year ago
0
KeyError when downloading original_no_seq weights
#12
cjroberts
closed
1 year ago
5
Very long calculation time on symmetric map
#11
ctueting
opened
1 year ago
9
Minimize memory usage
#10
jamaliki
closed
1 year ago
0
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