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Hi!
We use samtools tview to generate some output we then share via an internal API endpoint. Historically, we used samtools 1.9 + miniconda and everything worked as expected.
However, we had to…
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Hey!
I've stumbled upon this project as we've started using your excellent htsget-rs server implementation :)
Now that we're trying to lazily consume the stream of CRAM/BCF on the client side ([…
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Create a docker container through GitHub actions
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**Problem:**
As per the [current TES specification](https://github.com/ga4gh/task-execution-schemas/blob/117cd927aa119469ee80cedbd8940c968b81c5d6/openapi/task_execution_service.openapi.yaml#L771-L7…
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_I didn't know where to create this issue, here or in the `lega-cryptor`'s repo, but since it affects my current task in this repo, I placed it here. Feel free to create a copy there._
I'm writing …
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# Description
I am running WfExS with the config files shown below. When I run `WfExS-backend.py -L local-config.yml stage -W test-stage.yml` I get the following error: `NotADirectoryError: [Errno 20…
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Some exciting news!
The Methods team at Broad recently applied for, and were subsequently awarded a [grant](https://chanzuckerberg.com/eoss/proposals/htsjdk-enhancing-the-java-toolkit-for-emergin…
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Hello htslib devs,
I'm starting to work on a htsget-server implementation that relies on htslib, based on preliminary work on https://github.com/samtools/hts-specs/pull/385. The first issue I've fo…
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Currently we have 2 dockerfile for [filer](https://github.com/elixir-cloud-aai/TESK/blob/main/deployment/containers/filer.Dockerfile) and [taskmaster](https://github.com/elixir-cloud-aai/TESK/blob/mai…
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(Requested duplicate to https://github.com/ResearchObject/ro-crate/issues/217)
As an academic distributing software, I've just found myself making a conda environment (instead of a pip requirements…