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umccr
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icav2-cli-plugins
A set of additional subcommands for icav2
MIT License
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Refactor, use wrapica, new analysis features
#274
alexiswl
closed
1 week ago
0
Pull down the CWL object from the pipeline file to generate the CWL inputs template
#273
alexiswl
opened
2 weeks ago
0
Config yaml must exist before initialising a tenant
#272
alexiswl
opened
1 month ago
1
Refactor check_args to allow for assignments from args to attributes
#271
alexiswl
opened
1 month ago
0
--input-yaml should be an option for most 'post' commands
#270
alexiswl
opened
1 month ago
0
Redesign the icav2 projectanalysis list outputs
#269
alexiswl
opened
1 month ago
0
Bump libica version
#268
alexiswl
closed
3 months ago
0
Create source script instead of chunk to add to bashrc
#267
alexiswl
opened
3 months ago
0
Move to read-the-docs for documentation
#266
alexiswl
opened
3 months ago
0
Make a new repository for all the secondary functions
#265
alexiswl
opened
4 months ago
1
Add new command projectdata copy-manifest
#264
alexiswl
opened
5 months ago
0
"BROWSER" env var error for projectdata view
#263
alexiswl
opened
5 months ago
0
Create a docker container through ghcr.io
#262
alexiswl
opened
6 months ago
3
Add development page
#261
alexiswl
opened
6 months ago
0
Readme, show conda python 3.11 installation
#260
alexiswl
opened
6 months ago
0
Update main wiki home
#259
alexiswl
opened
6 months ago
0
Fix typo in linking for pandoc install script
#258
alexiswl
closed
6 months ago
0
Pandoc typo means incorrect linking of pypandoc to bin directory
#257
alexiswl
closed
6 months ago
0
Update readme and wiki to include latest tools
#256
alexiswl
opened
6 months ago
1
[bump-version.sh] Bumped version in toml to '2.20.0'
#255
alexiswl
closed
6 months ago
0
Bugfix use tomllib over toml
#254
alexiswl
closed
6 months ago
0
Enhancement/add bump version script
#253
alexiswl
closed
6 months ago
0
Push v2.20.0
#252
alexiswl
closed
6 months ago
0
Autocompletion/add commands
#251
alexiswl
closed
6 months ago
0
Add command projectdata check-ownership
#250
alexiswl
opened
6 months ago
2
enhancement/pipeline-update
#249
alexiswl
closed
6 months ago
0
Bugfix/pytoml fixes
#248
alexiswl
closed
6 months ago
0
Add command projectpipeline clone
#247
alexiswl
opened
6 months ago
1
Use pyproject.yaml over just requirements.txt
#246
alexiswl
closed
6 months ago
0
Move to using pyproject.toml
#245
alexiswl
closed
6 months ago
0
Add command icav2 projectdata rclone
#244
alexiswl
opened
6 months ago
1
Updated projectdata docstring to include copy subcommand
#243
victorskl
closed
6 months ago
0
Add 'bump' script to 'tag', 'pr' and release
#242
alexiswl
closed
6 months ago
0
Fixed install script syntax closure
#241
victorskl
closed
7 months ago
1
fix install script
#240
victorskl
closed
7 months ago
9
Allow placeholders for analysis output and output folder path inputs
#239
alexiswl
closed
7 months ago
0
Workflow codes generated from github releases dont have datestamps
#238
alexiswl
closed
7 months ago
0
Added analysis output option
#237
alexiswl
closed
7 months ago
0
Find replace drop of libica version into shell function
#236
alexiswl
closed
7 months ago
0
Bump libica to 2.3.0
#235
alexiswl
closed
7 months ago
0
Revert folders to be mounted at the top of the scratch space
#234
alexiswl
closed
7 months ago
0
Bump libica to 2.3.0
#233
alexiswl
closed
6 months ago
0
Re-revert directory mount changes
#232
alexiswl
closed
6 months ago
0
Create command function for importing inputs via a yaml or cli.
#231
alexiswl
closed
6 months ago
0
Regenerate the inputs for analysis
#230
alexiswl
opened
7 months ago
1
Capture 403 errors
#229
alexiswl
closed
7 months ago
0
Check curl version is later than 7.76 (for --fail-with-body parameter)
#228
alexiswl
closed
7 months ago
0
check python3 version
#227
alexiswl
closed
7 months ago
0
Pipeline names are becoming too long
#226
alexiswl
closed
6 months ago
0
Add data to bundle fails with the following error
#225
alexiswl
closed
6 months ago
0
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