umccr icav2-cli-plugins issues

umccr / icav2-cli-plugins

A set of additional subcommands for icav2

MIT License

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issues

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Write script path fails when there's no s3 sync args presented

#283 alexiswl opened 1 week ago
0
ICAv2 Projectpipelines download fails

#282 alexiswl opened 2 weeks ago
0
Use SHELL_EXE=$(readlink -f /proc/$$/exe) over $SHELL in source script

#281 alexiswl opened 1 month ago
0
Create hotfix for projectdata path error

#280 alexiswl closed 3 months ago
0
Fix project data coercion bug

#279 alexiswl closed 3 months ago
0
icav2 projectdata ls /path/ is failing

#278 alexiswl closed 3 months ago
0
Merge pull request #276 from umccr/dev

#277 alexiswl closed 4 months ago
0
Prod release for 2.27.1

#276 alexiswl closed 4 months ago
0
ProjectPipelines create-wes-template provides incorrect examples for cwltool overrides

#275 alexiswl opened 4 months ago
2
Refactor, use wrapica, new analysis features

#274 alexiswl closed 5 months ago
0
Pull down the CWL object from the pipeline file to generate the CWL inputs template

#273 alexiswl closed 4 months ago
0
Config yaml must exist before initialising a tenant

#272 alexiswl closed 4 months ago
1
Refactor check_args to allow for assignments from args to attributes

#271 alexiswl closed 4 months ago
0
--input-yaml should be an option for most 'post' commands

#270 alexiswl closed 4 months ago
0
Redesign the icav2 projectanalysis list outputs

#269 alexiswl closed 4 months ago
0
Bump libica version

#268 alexiswl closed 8 months ago
0
Create source script instead of chunk to add to bashrc

#267 alexiswl closed 4 months ago
0
Move to read-the-docs for documentation

#266 alexiswl opened 9 months ago
0
Make a new repository for all the secondary functions

#265 alexiswl closed 4 months ago
1
Add new command projectdata copy-manifest

#264 alexiswl opened 10 months ago
0
"BROWSER" env var error for projectdata view

#263 alexiswl opened 10 months ago
0
Create a docker container through ghcr.io

#262 alexiswl opened 11 months ago
3
Add development page

#261 alexiswl opened 11 months ago
0
Readme, show conda python 3.12 installation

#260 alexiswl opened 11 months ago
0
Update main wiki home

#259 alexiswl opened 11 months ago
0
Fix typo in linking for pandoc install script

#258 alexiswl closed 11 months ago
0
Pandoc typo means incorrect linking of pypandoc to bin directory

#257 alexiswl closed 11 months ago
0
Update readme and wiki to include latest tools

#256 alexiswl opened 11 months ago
1
[bump-version.sh] Bumped version in toml to '2.20.0'

#255 alexiswl closed 11 months ago
0
Bugfix use tomllib over toml

#254 alexiswl closed 11 months ago
0
Enhancement/add bump version script

#253 alexiswl closed 11 months ago
0
Push v2.20.0

#252 alexiswl closed 11 months ago
0
Autocompletion/add commands

#251 alexiswl closed 11 months ago
0
Add command projectdata check-ownership

#250 alexiswl opened 11 months ago
2
enhancement/pipeline-update

#249 alexiswl closed 11 months ago
0
Bugfix/pytoml fixes

#248 alexiswl closed 11 months ago
0
Add command projectpipeline clone

#247 alexiswl opened 11 months ago
1
Use pyproject.yaml over just requirements.txt

#246 alexiswl closed 11 months ago
0
Move to using pyproject.toml

#245 alexiswl closed 11 months ago
0
Add command icav2 projectdata rclone

#244 alexiswl closed 4 months ago
2
Updated projectdata docstring to include copy subcommand

#243 victorskl closed 12 months ago
0
Add 'bump' script to 'tag', 'pr' and release

#242 alexiswl closed 11 months ago
0
Fixed install script syntax closure

#241 victorskl closed 1 year ago
1
fix install script

#240 victorskl closed 1 year ago
9
Allow placeholders for analysis output and output folder path inputs

#239 alexiswl closed 1 year ago
0
Workflow codes generated from github releases dont have datestamps

#238 alexiswl closed 1 year ago
0
Added analysis output option

#237 alexiswl closed 1 year ago
0
Find replace drop of libica version into shell function

#236 alexiswl closed 1 year ago
0
Bump libica to 2.3.0

#235 alexiswl closed 1 year ago
0
Revert folders to be mounted at the top of the scratch space

#234 alexiswl closed 1 year ago
0