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**Describe the bug**
A clear and concise description of what the bug is.
A distributed training run on 8 GPUs using NCCL failed after 11 hours with:
```
[2022-12-21 10:42:45,191] [INFO] [loggi…
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Hi, I am using the CAMISIM and I am really appreciating your efforts!
I was wondering if I could just use a file-path-to-genome-id and a metadata.csv file to run de novo metagenome simulation? If so,…
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Gene sets can be downloaded via pasting the download request url in the browser, even when the user isn't logged. Works only for non denovo gene sets.
To reproduce:
1) open instance
2) go to geno…
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Hi,
As per the instructions, i have run the pipeline using the denovo-clustering and after which I provided the loci file of known miRNAs from miRBase. How am I supposed to get the ones which are n…
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Hallo Sir, I am a Linux Mint 19.3 Cinnamon user. My system is integrated with NVIDIA GPU and CUDA 11.3. Kindly guide me how to install your esteemed tool for denovo design and QSAR based prediction.
…
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If I have a CRAM file with `embed_ref=1` how do I get the reference out?
I can't find any `samtools` gateway to this, which I assume is probably in the `htslib` API ?
A use case for this is to f…
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Dear
I'm Prof. Aluisio, from UNILAB, Brazil. I am delighted with the results obtained by you through MolAICal. I started training the Denovo method and followed all the steps in the tutorial. But the…
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Hi,
Can HiC-Pro work without a reference genome? How distant genome (similar species) can work as a reference genome?
Thanks
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Hi
I ran the CIRIquant and everythings goes well but it generate empty gtf file (only has header as follow
##Sample: test
##Total_Reads: 8767472
##Mapped_Reads: 8257908
##Circular_Reads: 0
##ver…
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Hello, I am trying to assemble a plant genome using different genome assembly software. I am very interested in wengan, but I have some problems.
1. Do wengan supports computer cluster (_e.g._ sge…