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iossifovlab
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gpf
GPF: Genotypes and Phenotypes in Families
MIT License
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Separate federation
#713
IvoTod
closed
1 week ago
0
[BUG] Flaky parquet tests
#712
IvoTod
opened
1 week ago
0
[ENH] Update denovo and family reports.
#711
IvoTod
opened
1 week ago
0
annotation: use dashes in CLI tool arguments instead of underscores
#710
iordanivanov
closed
1 week ago
0
Parquet variants region fix
#709
iordanivanov
closed
2 weeks ago
0
bigwig: fix consecutive fetching of buffers
#708
iordanivanov
closed
3 weeks ago
0
bigwig: fix buffering issue with mismatch of 0-based/1-based position
#707
iordanivanov
closed
3 weeks ago
0
[ENH] Add pure python implementation for pheno classification
#706
IvoTod
opened
3 weeks ago
0
[ENH] Tests for pheno import
#705
IvoTod
opened
3 weeks ago
0
Fix pheno classification
#704
IvoTod
closed
3 weeks ago
0
bigwig: another buffering duplication bugfix
#703
iordanivanov
closed
1 month ago
0
bigwig: fix returning repeating score lines when using buffering
#702
iordanivanov
closed
1 month ago
0
Buffered bigwig
#701
iordanivanov
closed
1 month ago
0
Vep package
#700
IvoTod
closed
1 month ago
0
Fix cache workaround
#699
IvoTod
closed
1 month ago
0
bigwig: optimizations for bigWig scores
#698
iordanivanov
closed
1 month ago
0
Update classification parallelization
#697
IvoTod
closed
1 month ago
0
Pheno browser pagination
#696
IvoStefanov
closed
3 weeks ago
0
Refactor dataset description
#695
IvoStefanov
closed
1 month ago
0
genomic scores/genomic position table: new config field names
#694
iordanivanov
closed
1 month ago
0
pre-commit hook for Ruff lint check
#693
iordanivanov
closed
1 month ago
0
annotation: correct spelling of "preambule" to "preamble"
#692
iordanivanov
closed
1 month ago
0
bigwig: fix bug in fetch method, add more unit tests
#691
iordanivanov
closed
1 month ago
0
datasets_api: fix collection of dataset parents
#690
joankosev
closed
1 month ago
0
Pheno experiments
#689
IvoTod
closed
1 month ago
0
Vep tests
#688
IvoTod
closed
1 month ago
0
lint
#687
joankosev
closed
1 month ago
0
Fix permissions any user
#686
IvoTod
closed
1 month ago
0
cache: add caching for instance description and about page
#685
joankosev
closed
1 month ago
0
Fix access rights query on MySQL
#684
IvoTod
closed
1 month ago
0
Optimize dataset hierarchy search
#683
IvoTod
closed
1 month ago
0
Fix pheno group loading
#682
IvoTod
closed
1 month ago
0
Pheno groups
#681
IvoTod
closed
1 month ago
0
Improvement and fixes in serialisation of gene models in GTF format
#680
lchorbadjiev
closed
2 months ago
0
enrichment tool: round range_start and range_end
#679
joankosev
closed
2 months ago
0
[ENH] Enrichment tool: round range start/end
#678
joankosev
closed
2 months ago
0
Gp state api
#677
IvoStefanov
closed
2 months ago
0
order alphabetically pheno db search results
#676
IvoStefanov
closed
2 months ago
0
order alphabetically pheno db search results
#675
IvoStefanov
closed
2 months ago
0
VEP annotators
#674
IvoTod
closed
2 months ago
0
lint draw histogram mypy warnings
#673
IvoStefanov
closed
2 months ago
0
lint draw score histograms and rename test file
#672
IvoStefanov
closed
2 months ago
0
Serialization of gene models into GTF format
#671
iordanivanov
closed
2 months ago
0
Update ruff.toml and fix README.md
#670
iordanivanov
closed
2 months ago
0
Draw histogram tool
#669
IvoStefanov
closed
2 months ago
0
Fixes for bigwig genomic position table
#668
iordanivanov
closed
2 months ago
0
[BUG] De-synchronization in PriorityGenomicContext when the GRR instance is overriden
#667
iordanivanov
opened
2 months ago
0
Annotation maintenance part 2: refactor build_annotation_pipeline, store raw config in pipeline instance, streamline how tools get what they need from the genomic context
#666
iordanivanov
closed
2 months ago
0
grr: add support for style tag in resource description
#665
joankosev
closed
2 months ago
0
Unit test "test_normalize_tandem_repeats" depends on default GRR for hg38 reference genome
#664
iordanivanov
opened
2 months ago
0
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