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script prepare and be able to launch processing with standard parameters.
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- [x] a pbs script to launch coolAdmin pipeline (stable version) that taking parameters (`lib_id`) and this script i…
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# Context
@jahilton reported the case in [**#cell-science-platform**](https://czi-sci.slack.com/archives/C06AVGFV222/p1712859564920389).
This issue depends on [Add modality](https://github.com/…
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Thank you for your work in bioinformatics! I have tried using your package to extract signal from bigwig files, but I noticed that it is slower than Python's [pybbi](https://github.com/nvictus/pybbi/)…
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patent H3k36me3
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1. http://epigenomics.sdsc.edu:8088/Set_586/53f3be/setQC_report_chip.html
- H3K36me3 (`broadpeaks`): measuring gene body (RNA polymerase II (RNAPII) during transcription), def…
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Hi,
I am encountering a weird bug after inputting my data when I start the p-value normalization steps.
The annotateExpression and annotateModification steps work fine, so does the makePvalueObj…
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Step1 : make fastq files
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* [ ] transfer data from IGM/other sources: can ftp or symbolic links to folder `/ps-epigen/seqdata/IGM`,`/ps-epigen/seqdata/silencer`
* [x] need check or update s…
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Requirements for each workflow
- Adding description in meta
- Adding Ref map file location to description (indicate this is for inter-organizational use: private)
- Adding input description in para…
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**Project:**
Pseudo-WGS variant calling for common cell lines mining ENCODE and Roadmap Epigenomics data Recent progress in sequencing technologies have led to a massive production of epigenetic datas…
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[//]: # (You can add comment regarding your issue hereafter)
### Comments
- tiny change to definition
- link with topics = epigenetics, epigenomics
[//]: # (End of issue comments)
### Hereafte…
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Hi Kai,
I have several AnnData created directly from fragment files. If I did not add any matrix to AnnData's X, and combine them into AnnDataSet (this step is OK).
1. I find that it always rep…