issues
search
chanzuckerberg
/
single-cell-curation
Code and documentation for the curation of cellxgene datasets
MIT License
34
stars
22
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
fix: use getattr_anndata instead of __dict__
#941
Bento007
opened
11 hours ago
0
chore: fix spacing in schema_definition.yaml
#940
Bento007
opened
11 hours ago
0
chore(deps): bump actions/setup-python from 1 to 5
#939
dependabot[bot]
closed
13 hours ago
0
chore(deps): bump actions/cache from 1 to 4
#938
dependabot[bot]
closed
13 hours ago
0
chore(deps): bump the upload-download-artifact group with 2 updates
#937
dependabot[bot]
closed
13 hours ago
0
chore(deps): bump tiledb from 0.21.4 to 0.29.0 in /scripts/schema_bump_dry_run_genes
#936
dependabot[bot]
opened
13 hours ago
0
chore(deps): bump anndata from 0.8.0 to 0.10.7 in /cellxgene_schema_cli
#935
dependabot[bot]
opened
13 hours ago
0
chore(deps): bump the non-major-updates group across 1 directory with 7 updates
#934
dependabot[bot]
closed
12 hours ago
0
chore(deps): bump tj-actions/changed-files from 36 to 44
#933
dependabot[bot]
closed
13 hours ago
0
chore(deps): bump actions/upload-artifact from 3 to 4
#932
dependabot[bot]
closed
13 hours ago
1
chore(deps): bump actions/checkout from 3 to 4
#931
dependabot[bot]
closed
13 hours ago
0
chore(deps): bump aws-actions/aws-secretsmanager-get-secrets from 1 to 2
#930
dependabot[bot]
closed
13 hours ago
0
chore(deps): bump actions/download-artifact from 3 to 4
#929
dependabot[bot]
closed
13 hours ago
1
chore(deps): bump pandas from 2.0.1 to 2.2.2 in /scripts/schema_bump_dry_run_genes in the non-major-updates group across 1 directory
#928
dependabot[bot]
closed
12 hours ago
0
chore: dependabot tuning
#927
Bento007
closed
13 hours ago
1
chore(deps): bump pandas from 1.4.4 to 2.2.2 in /cellxgene_schema_cli
#926
dependabot[bot]
opened
14 hours ago
0
chore(deps): update scipy requirement from <1.13.0 to <1.14.0 in /cellxgene_schema_cli
#925
dependabot[bot]
opened
14 hours ago
0
chore(deps): bump cython from 0.29.34 to 3.0.10 in /cellxgene_schema_cli
#924
dependabot[bot]
closed
12 hours ago
0
chore(deps): bump the non-major-updates group in /cellxgene_schema_cli with 8 updates
#923
dependabot[bot]
closed
13 hours ago
1
chore(deps): bump codecov/codecov-action from 2 to 4
#922
dependabot[bot]
closed
14 hours ago
0
chore(deps): bump actions/stale from 5 to 9
#921
dependabot[bot]
closed
14 hours ago
0
chore(deps): bump aws-actions/configure-aws-credentials from 2 to 4
#920
dependabot[bot]
closed
14 hours ago
0
chore(deps): bump peter-evans/create-pull-request from 5 to 6
#919
dependabot[bot]
closed
14 hours ago
0
chore(deps): bump pre-commit/action from 3.0.0 to 3.0.1 in the non-major-updates group
#918
dependabot[bot]
closed
14 hours ago
0
chore(deps): bump the non-major-updates group in /scripts/schema_bump_dry_run_genes with 2 updates
#917
dependabot[bot]
closed
13 hours ago
1
chore: switch to pyproject.toml
#916
Bento007
closed
14 hours ago
1
AUTO: update migrate.py schema_version 5.1.0
#915
github-actions[bot]
closed
15 hours ago
0
fix: update migration_template for linting and generate_script.py to add GENCODE_MAPPER
#914
nayib-jose-gloria
closed
15 hours ago
2
AUTO: update migrate.py schema_version 5.0.0->5.1.0
#913
github-actions[bot]
opened
16 hours ago
0
chore: upgrade GHA python version >=3.10
#912
Bento007
closed
17 hours ago
0
Create a new GitHub release with the new schema version
#911
Bento007
opened
1 day ago
0
Update any hard-coded schema references in single-cell-data-portal to use the new schema version
#910
Bento007
opened
1 day ago
0
Update CellGuide and WMG to use the new schema version
#909
Bento007
opened
1 day ago
0
Coordinate any downstream changes with Census and Applications
#908
Bento007
opened
1 day ago
0
Bulk publish the new datasets
#907
Bento007
opened
1 day ago
0
Run the migration in prod, which publishes the new cellxgene-schema package to PyPI. Iteratively address any feedback from Lattice or errors we see.
#906
Bento007
opened
1 day ago
0
Run the migration in dev. Iteratively address any feedback from Lattice or errors we see.
#905
Bento007
opened
1 day ago
0
Run the migration in rdev
#904
Bento007
opened
1 day ago
0
Bump GENCODE files, if applicable. Iteratively address any feedback from Lattice.
#903
Bento007
opened
1 day ago
0
chore: upgrade the version of COG
#902
Bento007
closed
17 hours ago
1
Release COG(Cellxgene-ontology-guide) with update ontologies
#901
Bento007
opened
1 day ago
0
Bump to the new version
#900
Bento007
opened
1 day ago
0
Release version 5.0.4
#899
Bento007
closed
2 days ago
0
fix: load SparseDatasets into memory
#898
Bento007
closed
2 days ago
0
chore: update pre-commit versions
#897
Bento007
closed
16 hours ago
0
chore: roll back checks from patch
#896
Bento007
closed
1 week ago
0
Release version 5.0.3
#895
Bento007
closed
1 week ago
1
upgrade anndata to latest version
#894
Bento007
opened
1 week ago
1
chore: add dependabot.yml
#893
Bento007
closed
14 hours ago
0
Refreshed ontologies
#892
brianraymor
closed
1 week ago
0
Next