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- Can a `DataObject` that is the output of any process use any `FileTypeEnum` in it's `data_object_type` slot?
- do the different permissible values come from different axes of differentiation?
- sh…
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Greetings,
I am the author of Genozip (www.genozip.com) - a software package for compressing FASTQ / BAM / VCF.
When compressing a fastq file, Genozip first inflates the gzip compression before…
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Hi, I am testing igzip with big genomic data (in FASTQ format). As wished, igzip is much much faster than gzip, but the compression ratio is not as good as gzip.
```
igzip = 963083897
gzip = 8431…
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Galaxy supports fastq.gz files. For anyone interested in very fast gzip compression I recommend checking out [ISA-L](https://github.com/intel/isa-l). Which comes with an `igzip` application that decom…
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Sooner or later I would also like to move from Ram's format where uninformative fastq lines are removed before putting the records on one line to my more straight-forward "tabbed fastq" format where n…
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When running blastx using paired end fastq-formatted reads as query input:
```
diamond blastx -d reference.dmnd -o results.tsv -q R1.fastq R2.fastq
```
...the job fails with the message:
`…
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HI all,
[zstd](https://github.com/facebook/zstd) is a relatively new compression algorithm with incredible speed and compression ratios. I've been using zstd (via stream redirection) on fastq files…
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ACO achieves better compression ratio on qualtiy than all the other tested algorithms, but when I try to run the codec with CoderWithMean mode, it often turns out to be coredump . Is it possible that …
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### Setup
Reported by @sagitter as part of #1693
```
Python 3.7.0rc1
GCC 8.1.1
Linux 4.18.0-0.rc1 fedora
Biopython 1.71
```
### Expected behaviour
```
+ /usr/bin/python3 run_tests.py…
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Hello!
I am running bwa-mem2 2.2.1--hd03093a_5 from biocontainers using singularity. On a specific dataset (ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR470/009/ERR4705259/ERR4705259_1.fastq.gz ftp://ftp.…