bbuchfink diamond issues

bbuchfink / diamond

Accelerated BLAST compatible local sequence aligner.

GNU General Public License v3.0

991 stars 182 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

consistency of option "--outfmt 6 qseq sseq" with blastp

#818 kad-ecoli opened 1 day ago
0
tmpdir issue

#817 mintonrl opened 1 day ago
0
paired-end diamond with local database

#816 2061574124 opened 5 days ago
0
segmentation fault

#815 juliayork opened 1 week ago
0
--global-ranking, impact and when to set lower?

#814 fpusan opened 1 week ago
0
Conda/bioconda install - packages not found error

#813 ryan-boobybiome opened 2 weeks ago
0
Cannot include both --query_cover and --subject_cover in my search.

#812 KPapac opened 3 weeks ago
0
Diamond with database of small kmers

#811 raeshrode opened 1 month ago
0
Request: pre-built databases for download

#810 bheimbu opened 1 month ago
0
Error: Error opening temporary file 24/diamond-tmp-YA0Xiz

#809 JipengLuo opened 1 month ago
0
Linking CXX executable diamond fails during make

#808 Monkjj opened 1 month ago
1
singular version of staxids command?

#807 ewaltari opened 1 month ago
1
Error running tutorial : "Computing alignments... Illegal instruction: 4" (MACOS)

#806 rberlemont opened 1 month ago
0
Blast database formatted with prepdb does not support taxonomic information

#805 cedricblais opened 1 month ago
3
Use custom score matrix error？

#804 liufuyan2016 opened 1 month ago
1
Error: Invalid parameter count for option '--tmpdir'

#803 lhxaurora opened 1 month ago
1
Is there an option like blastp to set word size for short sequences?

#802 graa4 opened 2 months ago
1
When running diamond blastp in multiprocessing mode, some processes hang or segfault non deterministically.

#801 beazerj opened 3 months ago
1
Could not find diamond in dependencies/ folder.

#800 karthickbrlab closed 3 months ago
0
trying to use diamon on macos

#799 keecarter opened 3 months ago
1
`view qseq` uses letters `ARND` instead of `ACTG`

#798 imLew opened 3 months ago
2
Feature request: PSSM output and input

#797 DanBuchan opened 3 months ago
2
Diamond view throws segmentation fault (core dumped) error

#796 SaimMomin12 opened 3 months ago
1
resident size (66266557647) exceeds memory limit

#795 zhengqibonan closed 3 months ago
1
resident size (66266557647) exceeds memory limit

#793 zhengqibonan closed 3 months ago
0
v2.1.9 does not output `send` correctly when using long-read mode

#791 xinehc opened 3 months ago
2
Formatted NR database

#790 stephen-14 opened 4 months ago
2
Inconsistent Percentage of Identity Calculations with 'X' Characters in DIAMOND BLASTP Output

#789 nvucic opened 4 months ago
1
Inconsistent taxonomy assignment results for the same sequences

#788 XHe20 opened 4 months ago
1
About the '--masking 0' option

#787 graa4 opened 4 months ago
2
Segmentation fault at stage of joining output blocks

#786 charlesfoster opened 4 months ago
1
Segmentation fault (core dumped) in V2.1.9

#785 miparrama opened 4 months ago
10
read numbers in diamond input, output and Megan "no hits"

#784 rocherbpb opened 4 months ago
1
The lengths of sseq and qseq in the output results of diamond blastp are inconsistent

#783 graa4 closed 4 months ago
4
Question: Force all vs all alignment?

#782 paoslaos closed 5 months ago
2
Question about min-orf change for blastx in v2.1.0

#781 Stikus closed 5 months ago
4
ERROR: : double free or corruption (!prev) and free(): corrupted unsorted chunks

#780 hans-vg opened 5 months ago
3
Diamond Windows Installation Question

#779 CW1211 opened 5 months ago
3
Command line options

#777 saassli21 opened 5 months ago
1
colnames and EC number

#776 SueFletcher opened 5 months ago
7
Diamond Windows Installation

#775 parsanayyara closed 5 months ago
4
Building reference seed array error

#774 kmanoharan01 opened 5 months ago
1
Genetic code start codon variation

#773 cmayer opened 5 months ago
1
Error: Gap penalty settings are not supported for this scoring matrix.

#772 cmayer opened 5 months ago
1
Fix build with clang 17

#771 Jehops closed 5 months ago
0
--cluster-steps parameter set as 'sensitive' in clustering

#770 AMbioinformatics opened 6 months ago
3
Build failure on FreeBSD CURRENT after import of llvm/clang v17

#769 Jehops opened 6 months ago
2
Diamond and frameshifts in longer hits. Different results in Blastx vs Blastp [Bug]

#768 Thernn88 opened 6 months ago
2
what parameter i should set to filter out all bacterial blastp results?

#767 terancehhwong opened 6 months ago
3
how to make a diamond-formatted KEGG database with taxonomic information from NCBI and KEGG brite?

#765 terancehhwong closed 6 months ago
1