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bbuchfink
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diamond
Accelerated BLAST compatible local sequence aligner.
GNU General Public License v3.0
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how to make a diamond-formatted KEGG database with taxonomic information from NCBI and KEGG brite?
#765
terancehhwong
closed
6 months ago
1
Diamond not able to detect repeats?
#763
gandarath
closed
6 months ago
7
About the running times
#762
KJ-Ma
opened
7 months ago
2
difference between qcov (ncbi blast) and qcovhsp (diamond blast)
#761
terancehhwong
opened
7 months ago
9
output file missing even though diamond works seemingly fine
#760
terancehhwong
closed
7 months ago
0
Error: Database file is not a BLAST database
#759
lida56
opened
7 months ago
5
diamond blastx support for IUPAC ambiguity code
#757
wiebepo
opened
7 months ago
1
DNA letter check logic
#756
ftegenfe
opened
7 months ago
1
Error: Input file is not a DAA file
#755
lucyintheskyzzz
closed
7 months ago
9
Quick question about data availability
#754
onsi
closed
7 months ago
2
Sequences apparently masked even when masking is disabled.
#753
ojanson
closed
7 months ago
2
difficult genome with repeated genes fails to self-align
#752
stubrown
opened
8 months ago
1
Inconsistent numbers of hits across split databases
#751
daron-m-standley
opened
8 months ago
5
LCA taxomic classification: minimal example
#750
danpal96
opened
8 months ago
2
Taxonomic families
#749
lucyintheskyzzz
closed
7 months ago
8
Diamond returns longer queries than the targets it was mapped against.
#748
Thernn88
opened
8 months ago
1
Diamond Clustering randomly crashing.
#747
Thernn88
opened
8 months ago
1
Blast running in a loop for nanopore data
#746
bioinfo23
opened
8 months ago
1
DIAMOND BLAST less queries aligned than reported alignment
#745
zdf1122
closed
8 months ago
0
install diamond
#744
vahidodin
opened
9 months ago
3
-M option
#743
kashutk
opened
9 months ago
1
Alternative translation tables
#742
wwood
closed
9 months ago
2
Implement efficient sorting
#741
bbuchfink
opened
9 months ago
0
Threads usage
#740
zhangwenda0518
closed
8 months ago
1
Does Diamond support DNA sequence (that cannot be translated into protein) alignment?
#739
simon19891216
opened
9 months ago
3
Alignment to multiple databases
#738
yusator
opened
9 months ago
1
Applying Diamond to short peptide searching
#737
ysbioinfo
opened
9 months ago
2
DIAMOND DeepClust -is this currently implemented?
#736
DaRinker
closed
9 months ago
1
Paired end fastq queries exit with "Error: Unequal number of sequences in paired read files."
#735
ryandkuster
opened
9 months ago
2
All-versus-all, Error code 1
#734
kat-king
opened
9 months ago
1
Unable to run makedb against nr with tax ids
#733
avilella
closed
10 months ago
1
Running multiple diamond searches in parallel on the same machine
#732
lm-jkominek
opened
10 months ago
4
Temporary directory: No such file or directory Error: Error opening temporary file Diamond/diamond-tmp-BqExkD
#731
Racataure
opened
10 months ago
1
Illegal Instruction message on makedb v2.1.5
#730
saskiadmp
closed
10 months ago
2
outfmt 6 how to set qseq_translated gapped
#729
xdgene
closed
10 months ago
0
random output using long read mode
#728
xinehc
opened
10 months ago
1
full_qqual seems to have become an int (was a string)
#727
terrycojones
opened
11 months ago
2
Database error: Invalid taxonomic rank and Error: Accession mapping file header has to be in one of these formats
#726
LR-2021
opened
11 months ago
1
Syntax error
#725
anhchi172
closed
11 months ago
1
util/string: Allow T/G/M/K size suffixes
#724
kdm9
closed
11 months ago
0
when i use diamond to align NR database with -f6, the second column is "BL_ORD_ID" instead of "accesion ID"?
#723
work-liuyang
opened
11 months ago
2
sensitivity options, definition
#722
mmpust
opened
11 months ago
1
Error: Multiprocessing mode is not compatible with database filtering
#721
Alexander-Rivero
closed
11 months ago
1
Using DIAMOND to get counts data?
#720
lilyyycao
closed
11 months ago
1
Issue with loading taxonomy names in Diamond
#719
joseailtoncruz
opened
12 months ago
13
Integrate clusters with taxonomy information | Feature request
#718
RocesV
opened
12 months ago
1
Error code -9
#717
avw-adifranco
closed
11 months ago
3
diamond+megan
#715
nclaesnacw
opened
1 year ago
1
Running out of disk space
#714
lm-jkominek
closed
11 months ago
2
Output format 7
#713
wakamoto5959
closed
12 months ago
2
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