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I am running the following command:
docker run -ti --rm \
-v /Users/neurolab/Desktop/Test_sub_002_fcmriprep_ciftify:/data:ro \
-v /Users/neurolab/Desktop/Test_sub_002_fcmriprep_ciftify:/o…
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While executing the cpac_run.py command to pre-process the fmri images I get the following errors:
```
180827-18:37:09,442 workflow INFO:
Collecting precomputed outputs
180827-18:37:09,449 workflow…
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In very short runs (in my case these runs will be excluded but are still part of the BIDS structure) the Butterworth filter is failing cause there are too few time points.
Unless I am missing some…
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I am trying to run [fMRI: SPM Auditory dataset](https://nipype.readthedocs.io/en/0.12.0/users/examples/fmri_spm_auditory.html) workflow. I have installed [fsl](https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/F…
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Dear Lars,
Thank you for creating and maintaining such an amazing toolbox.
I'm new to its use and I got stuck at the above warning. I read the threads on multiband and I believe I input the right…
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There are a few different situations that we probably want to support:
1. Raw BIDS dataset + full fMRIPrep derivatives
- At minimum, we'll have access to the transforms necessary to warp the d…
tsalo updated
1 month ago
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Hi all,
I have been trying to trouble shoot this problem for a week now, and would like some input from the experts.
I am running one subject as a test for a up coming pipeline using the follow…
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Hi there,
I just found this package and was wondering about average memory usage?
I am trying to denoise a single subject and 32 GB RAM seem not enough, i.e., python throws me a MemoryError.
I j…
fhopp updated
5 years ago
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Operating system
- [X] Linux
- [ ] Mac
- [X] Windows
### Operating system version
For example one of the fol…
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Hi all,
does anybody know if it is possible to use the BI-pipeline, without referring to a Freesurfer data structure?Also, by using anatonmical data that were segemented in other software?
Thank you!…