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Hi!
Is there any possibility to read a BAM file as a bank of sequences? Do you know of any software relying on GATB which would have done that?
Thanks!
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Hi,
Gap2Seq looks like a great tool and mostly performed well when I tested it (closing most smaller [
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Hello all,
I am using GATB library for my work. I have a naive question which I have not been able to find an answer for. While using one of the functions to find the abundance of a node (queryAbunda…
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From a previous github issue in re Simka:
"If you still need to recover kmer sequences, for instance recovering subsets of kmers according to their presence/absence in some datasets, you may have a…
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https://github.com/koadman/graphdeconvolution/blob/32775c8141abecb32c10bc99024c8de8703199b1/external/gatb/convertToGFA.py#L74
This line introduces an optional field, using a tag which is non-compli…
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While @halexand and I were running spacegraphcats on a group of TARA oceans samples, we encountered a segmentation fault during the `bcalm_cdbg` rule. This error only occurs with the conda package of …
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I am running
unitig-caller --call --reads input_reads.txt --out output_folder --threads 76 --pyseer
and
./DBGWAS -strains input_strains.txt -keepNA -output output_folder -nb-cores 76
the…
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### Description of feature
Hi all,
I noticed that when running assembly with Minia twice with exact same parameters, produced assembled genomes are slightly different
=> This is something known: …
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When clinking on the Compile and Run button to start compiling/running code snippet, the web browser may display the following error:
Your browser does not support file upload to a server.
…
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Runnig bcalm with this command: `bcalm -in INFILES -out OUTFILE -kmer-size 31 -abundance-min 1`
Produces this error:
```
UF MPHF constructed (4803 MB) 01:52:39 memory [curre…