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### Description of the bug
Hello,
I am trying to run GSEA but I get an error when trying to process the GMT file I obtained from MSigDB.
Previously, I have executed the pipeline without the G…
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### Description of the bug
Hi again,
I'm having trouble running the test profile of the pgsc calc in a new environment. When I run the test command, I get the error line "Module path must start wi…
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### Description of the bug
Hi all
I downloaded a recent nextflow via bioconda. Using the cluster's apptainer1.2.2.
The error happens when running the test command:
`nextflow run pgscatalog/pgsc_c…
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### Description of the bug
We are trying to redirect the scratch to /tmp on the BOWTIE2 task but it fails with:
> FATAL: container creation failed: mount /tmp/nxf.cN0zaFFBsi->/tmp/nxf.cN0zaF…
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### Description of the bug
When I launch the pipeline I get the following error
cat nf.output
/var/spool/slurm/d/job35576642/slurm_script: ligne13: bioinfo/nfcore-Nextflow-v21.10.6: Aucun fichie…
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Hi pgsc_calc team!
I had recently started a discussion about using pgsc_calc within cloud VM environments that have limited permissions built in (Terra, All of Us). Since then, I have just tried to…
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**Describe the bug**
A clear and concise description of what the bug is.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See er…
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### Description of the bug
Still trying to get --run_ancestry working, now encountering a new error during plink command execution:
```
FATAL: container creation failed: image driver mount fail…
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I upgraded dgenies and the tabs for plot alignment, etc don't show the tabs for uploading files as before.
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### Description of the bug
Apologies for rapid-fire bug reports. Trying to churn this analysis out before I get too busy to complete it.
The `--run_ancestry` function appears to not work on my s…