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nf-core
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mag
Assembly and binning of metagenomes
https://nf-co.re/mag
MIT License
191
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Post release version bump
#636
jfy133
closed
6 hours ago
2
Patch release 3.0.2 for fixing BUSCO, CONCOCT and Docker container errors
#635
jfy133
closed
10 hours ago
2
Bump versions for patch release
#634
jfy133
closed
6 days ago
1
Change BUSCO to run in offline mode when database already downloaded
#633
jfy133
closed
6 days ago
1
Fix: container updates docker manifest issues
#632
jfy133
closed
1 week ago
2
Update CONCOCT workflow to remove mismatch failure and update container to fix slow single-threaded CONCOCT
#631
jfy133
closed
6 days ago
1
Pipeline fails with mag_depth script error when bins are empty
#630
felipemachado85
closed
7 hours ago
2
Post release version bump
#629
jfy133
closed
3 weeks ago
1
Update the URL for --genomad_db in docs
#628
amizeranschi
closed
3 weeks ago
1
Upgrade gtdbtk to version 2.4.0 and use reference data release220
#627
amizeranschi
opened
4 weeks ago
0
Add missing CHANGELOG entry and bump versions for release
#626
jfy133
closed
3 weeks ago
1
Patch release 3.0.1
#625
jfy133
closed
3 weeks ago
1
Add module pyrodigal
#624
jasmezz
opened
1 month ago
0
Enter at postbinning stage
#623
prototaxites
opened
1 month ago
9
Allow Prodigal to create a gbk file instead of the gff
#622
amizeranschi
opened
1 month ago
0
Config restructure
#621
jfy133
opened
1 month ago
2
Added test_nothing nf-test and updated CI
#620
CarsonJM
opened
1 month ago
3
Skipping NFCORE_MAG:MAG:BOWTIE2_PHIX_REMOVAL_ALIGN
#619
aboddicker
closed
1 month ago
5
Fix centrifuge
#618
jfy133
closed
1 month ago
2
Post release changelog
#617
jfy133
closed
1 month ago
1
Release PR for 3.0
#616
jfy133
closed
1 month ago
4
Add new logo
#615
jfy133
closed
1 month ago
1
Important! Template update for nf-core/tools v2.14.1
#614
nf-core-bot
closed
1 month ago
1
Important! Template update for nf-core/tools v2.14.0
#613
nf-core-bot
closed
1 month ago
1
List of tool versions
#612
s-junguy
closed
2 months ago
1
CAT_DB process has harcoded CAT subdirectory names
#611
maxibor
opened
2 months ago
1
Pipeline completed sucessfully, but with errored process(es)
#610
Anenovaes
closed
2 months ago
1
Genome taxnomic classification with Sourmash
#609
prototaxites
opened
3 months ago
3
Update gtdbtk classifywf so doesn't break when mashdb given
#608
jfy133
closed
3 months ago
2
Replace CheckM with CheckM2
#607
CarsonJM
opened
3 months ago
1
Improve documentation on the effects of completeness/contamination filters
#606
jfy133
opened
3 months ago
0
Add checkm test profile
#605
jfy133
closed
1 week ago
3
add diamond support to mag
#604
MatthewJM96
opened
3 months ago
0
Bins in CheckM summary do not match bins in bin depths summary
#603
QingDAI0225
opened
3 months ago
7
feat: allow adna co-binning
#602
maxibor
closed
2 months ago
1
Error in executing PROKKA
#601
anugos
opened
3 months ago
4
CHECKM_LINEAGEWF failing with exit status 1
#600
carleton-envbiotech
closed
3 months ago
7
Important! Template update for nf-core/tools v2.13.1
#599
nf-core-bot
closed
1 month ago
6
NFCORE_MAG:MAG:GTDBTK:GTDBTK_CLASSIFYWF fails when all genomes classified by ANI screening step
#598
cedwardson4
closed
1 month ago
4
Centrifuge error - (ERR): mkfifo(/tmp/46.inpipe1) failed.
#597
skrakau
closed
1 month ago
3
Problem with DUMPSOFTWAREVERSIONS
#596
VasylVaskivskyi
closed
3 months ago
2
Important! Template update for nf-core/tools v2.13
#595
nf-core-bot
closed
4 months ago
1
Single end data input
#594
CarsonJM
closed
4 months ago
0
Created single end test
#593
CarsonJM
closed
4 months ago
2
CONCOCT (slow)
#592
CarsonJM
closed
4 months ago
1
Add test configs for krona and concoct
#591
jfy133
closed
4 months ago
2
Pipeline fails if only CONCOCT is turned on and other binners off
#590
jfy133
opened
4 months ago
0
Add documentation detailing phageome/virome analysis
#589
CarsonJM
opened
4 months ago
0
Expanded documentation for nf-core/mag use cases & downstream analysis
#588
CarsonJM
opened
4 months ago
0
Add coverm/contig and coverm/genome as options for calculating read alignment metrics
#587
CarsonJM
opened
4 months ago
0
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