-
Please see below for credible set star system implementation - to be added to:
- [x] 1. credible set widgets
- [ ] 2. credible set page -- metadata section
Data is already accessible through cred…
-
The MRC IEU at Bristol has a [specification](https://github.com/MRCIEU/gwas-vcf-specification) for storing GWAS summary statistics in a VCF file.
While I certainly have mixed feelings about using V…
-
Hello,
I was wondering what is the best approach to replicate significant SNPs from a MTAG analysis.
Say I conduct MTAG on disease1 and disease2 and I am interested in disease1-specific results…
-
Hello! I hope you are doing well! I am trying to use finngen GWAS summary statistics to run MTAG, but I get this error:
Trait 2: Dropped 64331 SNPs for duplicate values in the "snp_name" column
D…
-
Hi, could you please add Psychiatric Genomics Consortium Wave 3 Schizophrenia GWAS Meta-analysis Summary Statistics Release?
“Mapping genomic loci implicates genes and synaptic biology in schizoph…
-
Thanks for sharing such an excellent tool ! But I have problems that where or how to get **genome-wide eQTL summary statistics**(the example includes eQTL summary statistics for each gene), and how to…
-
Hello Team,
I am trying to run POSTGAP on my GWAS summary statistics before running Gprior as mentioned in the pipeline.
The issue is that POSTGAP is extremely slow and is not finishing even aft…
-
## 1. Bug description
I'm trying to import example GWAS summary statistics using the following code:
```
gwas_sumstats_path
-
Hello,
Love the methods implemented in PTWAS and the reasoning behind them.
There are some parts that are unclear to me about the workflow.
1. Using the significant weights you provided, it i…
-
We would like to verify whether there is a significant difference in efficiency of the hm pipeline for seq GWAS.
1. Calculate the average % of dropped and unable to harmonise variants among a repres…
ljwh2 updated
7 months ago