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neurogenomics
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MAGMA_Celltyping
Find causal cell-types underlying complex trait genetics
https://neurogenomics.github.io/MAGMA_Celltyping
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ERROR - reading gene covariate file: duplicate variable name 'Fetal_Neuron'
#156
bschilder
closed
1 week ago
6
Test auto-close
#155
bschilder
closed
2 weeks ago
0
Issue downloading & unzipping reference files for MAGMA run
#154
Al-Murphy
closed
2 weeks ago
3
How to use GWAS results from studies not included in this package
#153
barbareyex
closed
2 months ago
1
map_snps_to_genes
#152
ushagogal
closed
2 weeks ago
1
Error in sprintf(">50% of celltypes missing. %s celltypes\n in ctd but %s in results file.\n Did you provide the correct annotLevel?", : 参数数目太少
#151
hardworkandworkhard
closed
1 week ago
3
Update MAGMA file links
#150
bschilder
closed
5 months ago
0
map_snps_to_genes() and get_ctd() related errors
#149
zsf123525
closed
7 months ago
1
Magma used in other species
#148
sanderslhc
closed
11 months ago
1
found 0 valid gene covariates, for 0 genes defined in genotype data
#147
sanderslhc
closed
11 months ago
11
too many correlations
#146
sanderslhc
closed
1 year ago
0
map_snps_to_genes() related error
#145
barbareyex
opened
1 year ago
5
`map_snps_to_genes`: Handle bgzipped files
#144
bschilder
closed
1 year ago
1
Assess whether MAGMA can take multi-allelic SNPs
#143
bschilder
closed
1 year ago
13
ERROR - reading gene covariate file: duplicate covariate variable name
#142
bschilder
closed
1 year ago
3
*gsa.out: truncated `VARIABLE` names
#141
bschilder
closed
1 year ago
1
get_ctd doesn't work - "missing token error"
#140
the-confused-scientist
closed
1 year ago
1
`\doi{}` tag not rendering properly
#139
bschilder
closed
1 year ago
0
Add full AIBS data from all regions
#138
bschilder
closed
1 year ago
1
MAGMA.Celltyping::import_magma_files issue
#137
sofiapuvogelvittini
opened
1 year ago
1
Unable to import the example GWAS summary statistics when MUNGE = FALSE
#136
Sheenlei
opened
1 year ago
1
Fix top10 condition analysis
#135
AMCalejandro
closed
1 year ago
3
Maybe allow user to decide on how to adjust
#134
AMCalejandro
opened
1 year ago
2
Fix get_data gh
#133
AMCalejandro
closed
1 year ago
0
Fix adding full method to results
#132
AMCalejandro
closed
1 year ago
0
Almost all CTDs are not available
#131
AMCalejandro
closed
1 year ago
3
Problem with zeisel 2018 ctd
#130
KittyMurphy
closed
1 year ago
1
ERROR - configuration: unknown modifier 'twosided' for flag --set-annot
#129
AMCalejandro
closed
1 year ago
1
Bug report:Error in if (is.null(N) | is.na(N)) { : argument is of length zero
#128
ZhengGongwei
closed
1 year ago
4
Likely bug if dendro is set to Null
#127
AMCalejandro
closed
1 year ago
1
magma_tileplot does not overlap the dendrogram with the heatmap
#126
AMCalejandro
closed
1 year ago
2
WARNING: 228 columns (cell-types) have less than the expected number of quantile bins (10).
#125
AMCalejandro
closed
1 year ago
1
Unable to pass path to refen
#124
AMCalejandro
opened
1 year ago
0
Overadjustment for multiple testing?
#123
AMCalejandro
closed
1 year ago
2
Issue in EWCE if I leave MAGMA.Celltyping calculate the quantiles
#122
AMCalejandro
closed
1 year ago
1
`plot_celltype_associations`: Fix adding full method to results
#121
AMCalejandro
closed
1 year ago
2
Fix GH Actions
#120
bschilder
closed
1 year ago
2
Create CTDs from `scRNAseq` package datasets
#119
bschilder
opened
2 years ago
0
Upload Zeisel2018 CTD
#118
bschilder
closed
2 years ago
0
Automatically infer species from genes when `ctd_species=NULL`
#117
bschilder
closed
2 years ago
0
`get_driver_genes`: select genes by mean rank
#116
bschilder
closed
2 years ago
0
`merge_results`: create`save_dir` if not already present
#115
bschilder
closed
2 years ago
0
Use `adjust_zstat_in_genesOut` without a CTD
#114
bschilder
closed
2 years ago
1
conditional `calculate_celltype_associations`: `ERROR - reading gene covariate file: duplicate gene entry`
#113
bschilder
closed
2 years ago
2
`magma_tileplot`: `rror in q < 1e-05 : comparison (3) is possible only for atomic and list types`
#112
bschilder
closed
2 years ago
1
Update `full_workflow` vignette to work
#111
bschilder
closed
2 years ago
0
Parallelise MAGMA steps
#110
bschilder
opened
2 years ago
1
Add functions to import genes.out and genes.raw files into R
#109
bschilder
closed
1 year ago
2
`map_snps_to_genes`: Add *--genes-only* arg
#108
bschilder
closed
2 years ago
1
Error running after using new version of .rds files
#107
Captain-Pam
closed
2 years ago
4
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