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neurogenomics
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MAGMA_Celltyping
Find causal cell-types underlying complex trait genetics
https://neurogenomics.github.io/MAGMA_Celltyping
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`get_ctd`:`Error in gzfile(file) : invalid 'description' argument`
#106
bschilder
closed
2 years ago
0
Error in "map_snps_to_genes"
#105
LDHHAHA
closed
2 years ago
8
Add Tabula Muris
#104
bschilder
closed
2 years ago
0
MAGMA_Files_Public studies identification
#103
sofiapuvogelvittini
closed
2 years ago
1
get_genomeLocFile() issue
#102
shivani-raja
closed
2 years ago
8
Problem with get_genomeLocFile
#101
malosreet
closed
2 years ago
1
get_genomeLocFile error
#100
malosreet
closed
2 years ago
6
time out 300s
#99
Thinknoon
closed
2 years ago
4
Installation failed
#98
XihanZhang
closed
2 years ago
4
cell type data no longer compatible with EWCE
#97
roxyisat-rex
closed
2 years ago
3
Compare `MAGMA.Celltyping` v1.0 vs. v2.0
#96
bschilder
closed
2 years ago
0
Increase test coverage
#95
bschilder
closed
1 year ago
9
Remove EWCE from Remotes
#94
bschilder
closed
2 years ago
0
`MAGMA.Celltyping`: bschilder_dev upgrade
#93
bschilder
closed
2 years ago
3
Get MAGMA.Celltyping working on Windows
#92
bschilder
closed
2 years ago
0
map.snps.to.genes: Error in strsplit(first_line, "\t") : non-character argument
#91
Lei-Guo
closed
2 years ago
8
Use stored URLs for MAGMA_Files_Public
#90
bschilder
closed
2 years ago
0
Provide built-in links to MAGMA binaries
#89
bschilder
closed
2 years ago
0
Provide built-in MAGMA files
#88
bschilder
closed
2 years ago
0
Create hex sticker
#87
bschilder
closed
2 years ago
1
New function: `get_sub_SNP_LOC_DATA()`
#86
bschilder
closed
2 years ago
1
Move gene coordinate files
#85
bschilder
closed
2 years ago
2
Avoid `format.sumstats.for.magma` being interpreted as an S3 method
#84
bschilder
closed
2 years ago
1
Pass CRAN checks
#83
bschilder
closed
2 years ago
2
`Warning: ...storing paths of more than 100 bytes is not portable:`
#82
bschilder
closed
2 years ago
1
Print user-friendly magma commands
#81
bschilder
closed
2 years ago
0
Remove `genome_ref_path` as requirement for `calculate_celltype_associations`
#80
bschilder
closed
2 years ago
2
Remove `reshape` dependency
#79
bschilder
closed
2 years ago
0
`calculate_conditional_geneset_enrichment`: Handle different versions of MAGMA
#78
bschilder
closed
2 years ago
4
Add unit tests
#77
bschilder
closed
2 years ago
0
Benchmark `orthogene::all_genes` vs. `hgnc2entrez`
#76
bschilder
closed
2 years ago
1
Deprecate functions
#75
bschilder
closed
2 years ago
0
Remove `cowplot` dependency
#74
bschilder
closed
2 years ago
0
Create MAGMA files repository
#73
bschilder
closed
2 years ago
1
Remove `library` calls within code
#72
bschilder
closed
2 years ago
0
Make code human-readable
#71
bschilder
closed
2 years ago
0
Use `#### header ####` in comments
#70
bschilder
closed
2 years ago
0
Add both `@title` and `@description` to all Roxygen notes
#69
bschilder
closed
2 years ago
0
Make function arguments explicit
#68
bschilder
closed
2 years ago
0
Replace all usage of `1:10` syntax
#67
bschilder
closed
2 years ago
0
Remove `suppressWarnings` calls
#66
bschilder
closed
2 years ago
0
Add function links to Roxygen notes
#65
bschilder
closed
2 years ago
0
Make function argument names consistent
#64
bschilder
closed
2 years ago
1
Replace "." with "_" in function names
#63
bschilder
closed
2 years ago
1
Provide working `@examples`
#62
bschilder
closed
2 years ago
1
Remove `usethis` calls from uncommented code
#61
bschilder
closed
2 years ago
0
Avoid accidentally renaming columns
#60
bschilder
closed
2 years ago
2
Avoid duplicated Roxygen notes
#59
bschilder
closed
2 years ago
1
Reduce functions in namespace
#58
bschilder
closed
2 years ago
2
Convert inter-species orthologs automatically
#57
bschilder
closed
2 years ago
1
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