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Currently the htsget protocol assumes that some returned data blocks will contain reads that were not requested. This was an accepted trade-off in the spec but for some privacy usecases, those extra b…
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### Description of the issue:
While implementing support for [htsget in IGV-desktop](https://github.com/igvteam/igv/pull/850), we (@reisingerf and @brainstorm) noticed that there's no `htsgetVarian…
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The refget call on 2022-02-01 raised an issue about an impending version bump to refget and providing access to previous versions of the specification for future access e.g. another specification has …
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It would be fantastic to have this subcommand, here's how I do it for now (with python):
https://github.com/brainstorm/htsget-aws/blob/master/deploy/app.py
I guess that (very few?) lines of ruso…
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IGV.js does not support CRAMs directly, but does support htsget.
It would be great if the htsget server could support CRAMs.
I know this is listed in the README:
CRAM support will be added in the…
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Hi,
I'm trying to validate types (I'm using TS through JSDoc) in my codebase using `tsc`, but I stumbled upon a couple of issues in `@GMOD/bam@1.1.18`.
The first one:
```
../../node_modules/…
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There are a number of short identifier-sized pieces of metadata that are used across many GA4GH products. For example:
* Reference sequence names
In SAM/BAM/CRAM, this is the `@SQ-SN` header f…
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Hi there
It would be great if this htsget server supportted CORS!
That way javascript based code running in the browser can fetch it
For instance here https://www.test-cors.org/#?client_metho…
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I have a simple project with a benchmark using Rust's built-in `#[bench]` functionality written alongside unit tests, in the same file as the code I'm testing.
Usually I run benchmarks using:
``…
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We are interested in this package to serve as the `htsget` server for our clinical review pipeline (the only other htsget server seems to only support google cloud hosted files). I have managed to get…