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Based on KEGG ID, retrieve the reactome pathway.
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name | string | 추가 | NFKB1 연결 유무 | | | | | | | | |
-- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | --
NFKB1 | o | o | o | | | | | | | | |
ALK | x |…
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Good morning
I have one differentially abundant pathway between two groups and wish to plot it using the "pathway_errorbar":
p
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你好,关于通路文件的问题有个事情想请教您一下,我看到软件中您内置的人类的通路文件Genes_by_pathway_kegg,是个list格式,Genes_by_pathway_kegg都是用通路号进行表示的,当我把通路号换成通路名称的时候,再进行分析,Start to link gwas and pathway block annotations for xx pathways!,这个xx的数值发…
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Try to find proteins (that are not enzymes) in organism pathways, starting from Uniprot ID, and using KEGG KO database.
pkrog updated
4 years ago
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I have a list of metabolites, In the form of metabolite names, and also in the form of KEGG Ids. How can i run enrichment analysis on this data ? Please advise
Example data:
```
name keggid
Pyru…
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Hello @cafferychen777 ,
I have 2 datasets , I tested the script that is in #65 on the first and it worked nicely because when I print this command
(daa_sub_method_results_df1 % filter(p_adjust < 0…
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Regarding the KEGG annotation usage error, I have already followed up with #572
Seems like the error comes from not updating R or BiocManager or clusterprofiler..
I am currently using R 4.4, Bioc…
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Hello,
I am stuck at generating a heatmap for the KEGG pathway analysis. All the above steps went well (i think) but when I run the following command in R:
d3heatmap::d3heatmap(path_table, sho…