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Hi, great tool!
To make it even better, it would be nice to also support protein level result export to .txt/.tsv, as is implemented for the peptide level table.
at least pFind.protein cannot read…
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Hi there!!
First of all, thanks for developing an open source tool in R that can handle such complex datasets as those recurrent in proteomics and mass spec.
I am working with the MaxLFQ datase…
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Current state based on Tripal 3 Raw + Analyzed Phenotypes.
Share (i.e. analyzed)
- Trait Name: The full name of the trait as you would like it to appear on a trait page. This should not be abbrevi…
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The goal of this issue is to list and discuss trajectories from the literature to implement. I gathered a bunch of articles, and I would be curious to know
- Which ones should be prioritized ? (would…
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Hi,
I've got 10 workers running for the quantify step and they've been going for a day now, but nothing has been written to any output files... Is there a way to estimate how long this will take?…
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Hi Keniajin,
The way the R script is written it can work only with the example files. Do you plan to make it work for everyone?
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Hello,
I am trying to perform label-free quantification with LFQ-MBR on mzML converted files. I am getting an error regarding FDR threshold.
Would you have any idea how to fix this issue ? I have …
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Hi, I saw mention of a wiki for VISINITY but do not see it in the repo. Is that or other user documentation available?
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## Project info
**Title: Fantastic measures and how to repeat them: tractography-based test retest reproducibility of microstructural MRI**
![brainhack_icon](https://user-images.githubuserco…
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[log_2024-05-14_11-54-23.txt](https://github.com/Nesvilab/FragPipe/files/15318874/log_2024-05-14_11-54-23.txt)
Hello,
I am trying to perform label-free quantification with LFQ-MBR on mzML conv…