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It came up in the TDWG [Genomic IG](https://github.com/tdwg/gbwg) discussion that the event core is inadequate to model the needs of the GGBN, but is almost acceptable.
While we all agree that more…
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comments & suggestions
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Hello there,
I am currently working to integrate CRABS into a pipeline for evaluating primers for metabarcoding initiatives. We are particularly interested in the Pairwise Global Alignment feature …
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Hello Benjamin,
I've merged sequence tables of several `dada()` runs (in summary around 680 samples) and I am running the `collapseNoMismatch()` right now and it takes quite a while (it's running f…
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Hi Ben,
I have been using DADA2 on illumina sequenced COI data for the last year and it has become the backbone of my bioinformatics pipeline. We now have a PhD student in our group developing meta…
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Hello,
I'm testing SWARM for an eDNA metabarcoding pipeline to see how it performs compared to a "normal" OTU approach with `vsearch`.
I've tried implementing SWARM as per [Fred's MB pipline](h…
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We support a Contribution Annotation Framework that allows us to indicate roles of conributors. However, many tutorials still use the "old" style contribution metadata (without roles)
Updating this…
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From attempting to recreate the figure from the underlying data (and my own analysis of the FASTQ files), I think there is a misplaced False Negative annotation on Figure 3. I do not believe this chan…
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in the settings file, there is no explanation on what is required for the following:
##MARKERS TO ANALYSE
Targets=""
#File containing marker primer sequences
PrimerFile=
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**Dataset title**
Genome Taxonomy Database (GTDB)
**Dataset contact & access**
https://gtdb.ecogenomic.org/
https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/ar122_taxonomy.tsv
https:…