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gjeunen
/
reference_database_creator
creating reference databases for amplicon sequencing
MIT License
24
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8
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Save images from command line
#67
gregdenay
opened
3 weeks ago
4
Update conda package
#66
famosab
opened
4 weeks ago
3
tax_format: loose species names for dad format
#65
nroux66
closed
1 month ago
5
db_download --species argument
#64
Guillermouceda
opened
2 months ago
13
empty temp files when downloading NCBI
#63
mikeallen-eco
opened
2 months ago
3
primer_efficiency not recovering sequences on file and output structure
#62
rturba
opened
2 months ago
3
insilico_pcr and pga functions fail when running multiple job at once: an intermediate files conflict?
#61
ThomasLuypaert
opened
2 months ago
3
Installation warning and db_download does not download sequences
#60
sarah-nichols
closed
3 months ago
4
Unable to pull crabs image from docker
#59
eneave
opened
4 months ago
2
EMBL issues with in silico PCR
#58
emm308
opened
5 months ago
2
OverflowError
#57
LuciaRanieri97
opened
6 months ago
2
In silico PCR (Fatal error)
#56
simiaoyan
opened
6 months ago
5
OverflowError: FASTA/FASTQ record does not fit into buffer
#55
mariaelf97
closed
6 months ago
1
Use vsearch threads argument
#54
pieterprovoost
opened
7 months ago
0
decrease in sequences for BOLD database after assign_tax
#53
rturba
closed
6 months ago
11
taxID must be present after assign_tax step for the program to work?
#52
timz0605
opened
7 months ago
1
How to append in-house barcode in missing_taxa to tax_assign
#51
timz0605
opened
7 months ago
3
is CRABS multithreaded?
#50
slambrechts
closed
7 months ago
2
PGA with embl database
#49
slambrechts
closed
7 months ago
2
PGA output file name override
#48
jordanpcuff
opened
8 months ago
1
Download all eukaryote COI sequences from BOLD
#47
timz0605
opened
8 months ago
6
effect of dereplication method
#46
slambrechts
opened
9 months ago
1
PGA difference between conda and docker versions? but better with conda??
#45
eddydowle
opened
10 months ago
1
crabs visualization counts dont match up with NCBI
#44
eddydowle
opened
10 months ago
0
crabs issue in taxonomy downloading and unzipping
#43
Gratutu
closed
10 months ago
3
db_download error
#42
fang9319
opened
11 months ago
1
db_download UnicodeDecodeError
#41
rturba
opened
11 months ago
7
The default value of --minlen and --maxlen in seq_cleanup is not very appropriate
#40
billzt
opened
11 months ago
0
seq_cleanup --species and --nans arguments
#39
slambrechts
closed
12 months ago
2
crabs pga percid parameter
#38
slambrechts
closed
1 year ago
2
Needed to merge the output of crabs insilico_pcr and crabs pga?
#37
slambrechts
closed
1 year ago
2
number of errors allowed in primer-binding site
#36
slambrechts
closed
1 year ago
2
fixed error message when downloading mitofish db
#35
a4000
closed
1 year ago
1
MitoFish DB fails to download
#34
cement-head
opened
1 year ago
17
primer_efficiency KeyError
#33
rturba
closed
12 months ago
33
Issues installing with conda
#32
A33miller
opened
1 year ago
2
What delimiter to use with db import for standard NCBI and EMBL databases
#31
slambrechts
closed
1 year ago
3
CRABS in Docker
#30
lepatrick1
closed
1 year ago
7
Alignment file or phylogenetic tree not generated when running visualization method phylo
#29
andremicc
opened
1 year ago
13
Duplicated lines in .tsv file after assigning taxonomy step
#28
Twrodgers
closed
1 year ago
6
Issue "UnboundLocalError: local variable 'seqcount' referenced before assignment" when db_download from NCBI
#27
andremicc
closed
1 year ago
0
Issue running db_download "UnboundLocalError: local variable 'seqcount' referenced before assignment"
#26
andremicc
closed
1 year ago
1
--method diversity
#25
LiLu-1
closed
1 year ago
5
Unable to pull current version using docker
#24
KristenFern
closed
1 year ago
3
db_download not working for EMBL
#23
mikeallen-eco
closed
1 year ago
3
in_silico PCR error (missing init_trimmed.fasta)
#22
mikeallen-eco
closed
1 year ago
1
in_silico command error
#21
Guillermouceda
closed
1 year ago
11
Extract amplicon sequences from downloaded reference database
#20
FabioGAmaral
opened
1 year ago
15
--missing argument assign_tax
#19
bkmontero
closed
1 year ago
5
db_download with embl
#18
fang9319
closed
1 year ago
2
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