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gjeunen
/
reference_database_creator
creating reference databases for amplicon sequencing
MIT License
28
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8
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Trying to create reference database from downloaded fasta file
#78
dylanstephen-s
closed
2 weeks ago
1
error with --in-silico-pcr
#77
brachy2
closed
3 weeks ago
1
Issue in downloaded data
#76
wpearman1996
closed
3 weeks ago
1
Issue with blast database generation
#75
wpearman1996
closed
3 weeks ago
1
EMBL database size issue
#74
saraswaminathan
opened
1 month ago
4
Issue with the use of the coverage argument as a decimal percentage in PGA sequence extraction
#73
camilababo
closed
1 month ago
2
Extra databases
#72
domivika
opened
1 month ago
1
problem with the "--export" command
#71
DrPaulFrank
closed
3 weeks ago
2
Download BOLD database with --marker
#70
domivika
closed
1 month ago
2
in silico PCR error
#69
saraswaminathan
closed
1 month ago
2
NCBI nucleotide download issue
#68
saraswaminathan
closed
3 days ago
6
Save images from command line
#67
gregdenay
closed
1 month ago
5
Update conda package
#66
famosab
closed
3 days ago
7
tax_format: loose species names for dad format
#65
nroux66
closed
2 months ago
5
db_download --species argument
#64
Guillermouceda
closed
1 month ago
13
empty temp files when downloading NCBI
#63
mikeallen-eco
closed
1 month ago
4
primer_efficiency not recovering sequences on file and output structure
#62
rturba
closed
1 month ago
4
insilico_pcr and pga functions fail when running multiple job at once: an intermediate files conflict?
#61
ThomasLuypaert
closed
1 month ago
4
Installation warning and db_download does not download sequences
#60
sarah-nichols
closed
4 months ago
4
Unable to pull crabs image from docker
#59
eneave
closed
1 month ago
2
EMBL issues with in silico PCR
#58
emm308
closed
1 month ago
3
OverflowError
#57
LuciaRanieri97
closed
1 month ago
2
In silico PCR (Fatal error)
#56
simiaoyan
closed
1 month ago
6
OverflowError: FASTA/FASTQ record does not fit into buffer
#55
mariaelf97
closed
8 months ago
1
Use vsearch threads argument
#54
pieterprovoost
opened
8 months ago
0
decrease in sequences for BOLD database after assign_tax
#53
rturba
closed
8 months ago
11
taxID must be present after assign_tax step for the program to work?
#52
timz0605
closed
1 month ago
2
How to append in-house barcode in missing_taxa to tax_assign
#51
timz0605
closed
1 month ago
3
is CRABS multithreaded?
#50
slambrechts
closed
9 months ago
2
PGA with embl database
#49
slambrechts
closed
9 months ago
2
PGA output file name override
#48
jordanpcuff
closed
1 month ago
1
Download all eukaryote COI sequences from BOLD
#47
timz0605
closed
1 month ago
6
effect of dereplication method
#46
slambrechts
closed
1 month ago
1
PGA difference between conda and docker versions? but better with conda??
#45
eddydowle
closed
1 month ago
1
crabs visualization counts dont match up with NCBI
#44
eddydowle
closed
1 month ago
0
crabs issue in taxonomy downloading and unzipping
#43
Gratutu
closed
1 year ago
3
db_download error
#42
fang9319
closed
1 month ago
4
db_download UnicodeDecodeError
#41
rturba
closed
1 month ago
7
The default value of --minlen and --maxlen in seq_cleanup is not very appropriate
#40
billzt
closed
1 month ago
1
seq_cleanup --species and --nans arguments
#39
slambrechts
closed
1 year ago
2
crabs pga percid parameter
#38
slambrechts
closed
1 year ago
2
Needed to merge the output of crabs insilico_pcr and crabs pga?
#37
slambrechts
closed
1 year ago
2
number of errors allowed in primer-binding site
#36
slambrechts
closed
1 year ago
2
fixed error message when downloading mitofish db
#35
a4000
closed
1 year ago
1
MitoFish DB fails to download
#34
cement-head
closed
1 month ago
18
primer_efficiency KeyError
#33
rturba
closed
1 year ago
33
Issues installing with conda
#32
A33miller
closed
1 month ago
2
What delimiter to use with db import for standard NCBI and EMBL databases
#31
slambrechts
closed
1 year ago
3
CRABS in Docker
#30
lepatrick1
closed
1 year ago
7
Alignment file or phylogenetic tree not generated when running visualization method phylo
#29
andremicc
closed
1 month ago
14
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