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**Is your feature request related to a problem? Please describe.**
The text that gets printed out during metaclustering isn't intuitive, as different steps seem to have the description
**Describe …
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I have just updated FlowSOM to v2.2.0 and I came into troubles using Metaclustering
As a reproducible example:
```r
# from help
fileName
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*Please refer to our [FAQ](https://ark-analysis.readthedocs.io/en/latest/_rtd/faq.html) and look at our [known issues](https://github.com/angelolab/ark-analysis/issues) before opening a bug report.*
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In the current version, the `FlowSOM::MetaClustering()` function throws an error unless the `method` argument is set to "metaClustering_consensus". Here is a minimal reproducible example:
``` r
t…
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Hi Helena,
I will preface that I am not a skilled coder, but I am having issues with reproducibility of UMAP metaclustering for a dataset in CATALYST. I use seeds every time I start an analysis, bu…
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**Is your feature request related to a problem? Please describe.**
Currently clustering must take place outside of the context of the pipeline. We should add in functionality to perform clustering so…
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Hi I would like to specify the number of cores to dedicate to this script, however there is no real specification in the README.md file. It states that the normal and multi-thread versions of the scri…
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Hi Sofie,
I just realised that there is no way to set a seed when FlowSOM is used to automatically infer the optimal number of meta clusters. I have tried passing the seed as seed parameter, but it …
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Hi Camden,
I am working on implementing SOMatic on allot of different chip samples. The ability to create and link an RNA-seq SOM to the ChIP-SOM will really take this analysis to the next level. …
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Hello
sorry for bothering (and thanks again for the previous tips_.
I have 3 quick questions:
#1. As compared to phenograph, CATALYST::cluster requires an upper limit for the number of clusters. is…