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The [OMA book](https://microbiome.github.io/OMA/microbiome-community.html#community-typing) has a section on community typing.
Now @ChouaibB is adding example on DMM using one of our demo data sets…
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In an attempt to include more examples about probabilistic modeling/analysis approaches to microbiome data to be available in the book.
`pibble` from the `fido` package offers a Multinomial Logistic…
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@tosfos I'd like to filter signatures exported from BugSigDB by review status for #80.
This seems currently not possible as the only column that we have in the export csv files on review status is `R…
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Hello Prof. Yu,
I find your clusterProfiler (http://yulab-smu.top/clusterProfiler-book/) a useful tool and tried to follow the tutorial.
Since i am working on the gut microbiome and have KEGG pathwa…
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from https://github.com/ArctosDB/arctos/issues/2541#issuecomment-608044500
AWG suggestion
* make 100-character description hard requirement
_Originally posted by @dustymc in https://github…
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The function name `estimateDiversity` is somewhat confusing since we have the concepts of alpha, beta, and gamma diversity in (microbial) ecology. Hence, `estimateAlphaDiversity` would be a more descr…
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hello no work fix
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**Submitting author:** @schuyler-smith (Schuyler Smith)
**Repository:** https://github.com/schuyler-smith/phylosmith/
**Version:** 0.99.0
**Editor:** @karthik
**Reviewer:** @joey711
**Archive:** 10.52…
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The section 1.2 Useful functions/resources has link to List of R tools for microbiome analysis. A typo in the repository name for List of R tools for microbiome analysis website. Now the link is broke…