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microbiome
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mia
Microbiome analysis
https://microbiome.github.io/mia/
Artistic License 2.0
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transformAssay and altexp
#660
TuomasBorman
opened
2 days ago
0
getPrevalent / getPrevalence
#659
antagomir
opened
3 days ago
0
agglomeration functions and na.rm
#658
TuomasBorman
closed
1 week ago
5
Add PERMANOVA functions
#657
TuomasBorman
closed
1 week ago
2
Update tree agglomeration
#656
TuomasBorman
closed
2 weeks ago
0
Fix getDivergence
#655
TuomasBorman
closed
2 weeks ago
0
agglomerateByVariable should have `na.rm` parameter?
#654
artur-sannikov
closed
1 week ago
5
Improve divergence function
#653
TuomasBorman
closed
3 weeks ago
0
Fix getCrossAssociation
#652
TuomasBorman
closed
1 month ago
3
getCrossAssociation outputs
#651
antagomir
opened
1 month ago
1
Improve support for spaces in variable names
#650
TuomasBorman
closed
3 weeks ago
3
getCrossAssociation, critical bug?
#649
antagomir
closed
1 month ago
4
Pull request to activate GH workflow on nix-flakes branch
#648
artur-sannikov
closed
1 month ago
0
splitOn error is not clear if using a wrong column name
#647
artur-sannikov
opened
1 month ago
1
Fix splitOn
#646
TuomasBorman
closed
1 month ago
0
Minor updates BIOM functions
#645
TuomasBorman
closed
1 month ago
0
Update README.md
#644
Daenarys8
closed
1 month ago
2
README banners
#643
antagomir
closed
1 month ago
0
Fix faith
#642
TuomasBorman
closed
2 months ago
0
FIx: capture sk__ prefix
#641
TuomasBorman
closed
2 months ago
0
Alphabetize packages
#640
artur-sannikov
closed
1 month ago
2
Update RDA/CCA functions
#639
TuomasBorman
closed
1 month ago
9
deprecate f in favor of group
#638
Daenarys8
closed
1 month ago
2
get variable scores form sppscores in dbRDA
#637
Daenarys8
closed
2 months ago
1
refactor `f` to `group` in mia
#636
Daenarys8
closed
1 month ago
0
Improve addDivergence
#635
TuomasBorman
closed
2 months ago
8
dbRDA and loadings
#634
TuomasBorman
closed
2 months ago
1
RDA speedup
#633
antagomir
opened
2 months ago
0
Add error for missing tree in unifrac
#632
TuomasBorman
closed
2 months ago
0
smaller test file for type-less taxpasta biom
#631
d-callan
closed
2 months ago
1
smaller type-less taxpasta test file
#630
d-callan
closed
3 months ago
0
remove authors from fxns
#629
Daenarys8
closed
3 months ago
2
Remove authors from functions
#628
TuomasBorman
closed
3 months ago
1
mia::importHUMAnN() problem
#627
antagomir
closed
2 weeks ago
3
Give informative error when values are missing in addRDA
#626
RiboRings
closed
2 months ago
9
spell checker
#625
Daenarys8
closed
3 months ago
0
addDivergence from OMA vignette
#624
shwetha141
closed
3 months ago
17
accept other than ranks in addDominant
#623
Daenarys8
closed
2 months ago
14
more functional importers (e.g. humann)
#622
antagomir
opened
3 months ago
3
Add (optionally) information on butyrate producers to rowData in importing the taxonomic abundances
#621
antagomir
opened
3 months ago
0
typo in summary example
#620
Daenarys8
closed
3 months ago
1
Fix importTaxpasta
#619
d-callan
closed
3 months ago
7
Batch transformations. #429
#618
ake123
closed
2 months ago
6
agglomerate by rank duplicated taxa names
#617
li-fangyeo
closed
3 months ago
13
NMF ordination with feature loadings computation
#616
thpralas
closed
3 months ago
11
ignore NAs when pseudocount is TRUE
#615
Daenarys8
closed
3 months ago
1
adding css method
#614
SHillman836
closed
2 months ago
10
Default pseudocount half of the minimum value
#613
TuomasBorman
closed
4 months ago
0
Fix addAlpha
#612
TuomasBorman
closed
4 months ago
0
Fix pseudocount
#611
TuomasBorman
closed
4 months ago
0
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