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microbiome
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mia
Microbiome analysis
https://microbiome.github.io/mia/
Artistic License 2.0
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getHierarchyTree: empty cells
#547
TuomasBorman
closed
1 month ago
0
Fixes to book #482 related mia update
#546
ake123
closed
1 month ago
1
Improve Tengeler2020
#545
RiboRings
closed
1 month ago
13
Fix rworkflow
#544
Daenarys8
closed
1 month ago
5
Revert "Temporal fix for rworkflow bug"
#543
Daenarys8
closed
1 month ago
0
agglomerateByRank: bugfix related to agglomeration non-existing tree
#542
TuomasBorman
closed
1 month ago
0
Get top explanatory features from PCoA loadings
#541
RiboRings
opened
1 month ago
9
Temporal fix for rworkflow bug
#540
Daenarys8
closed
1 month ago
11
Update GHA
#539
TuomasBorman
closed
1 month ago
1
Move functions replaced by transformAssay to deprecate file
#538
thpralas
closed
1 month ago
1
Update manual pages
#537
TuomasBorman
closed
2 months ago
0
Rename subsampleCounts to rarefyAssay
#536
thpralas
closed
1 month ago
0
get vs. add
#535
antagomir
opened
2 months ago
0
Rename meltAssay to meltSE
#534
thpralas
closed
1 month ago
2
Issue 445 map taxonomy
#533
Insaynoah
opened
2 months ago
6
R CMD Check contains NOTES
#532
TuomasBorman
opened
2 months ago
2
Rename estimateDivergence to addDivergence
#531
thpralas
closed
2 months ago
0
importMetaphlan: bugfixes
#530
TuomasBorman
closed
2 months ago
0
Rename getPrevalence to addPrevalence and getPrevalentAbundance to addPrevalentAbundance
#529
thpralas
closed
1 month ago
1
Rename countDominant* functions to summarizeDominance
#528
thpralas
closed
1 month ago
0
Rename perSampleDominant* to getDominant and addPerSampleDominant* to addDominant
#527
thpralas
closed
1 month ago
0
Rename getTop*, getPrevalent*, getUnique* and get Rare* functions
#526
thpralas
closed
1 month ago
0
correct typo 'importBiom' to 'importBIOM'
#525
thpralas
closed
2 months ago
0
rename calculateDPCoA, calculateNMDS, calculateRDA, calculateCCA
#524
thpralas
closed
1 month ago
1
Use Rbiom unifrac implementation instead of runUnifrac
#523
thpralas
closed
3 weeks ago
20
Faith index
#522
antagomir
opened
2 months ago
0
Replace subsetByPrevalent* and subsetByRare* functions with subsetByPrevalent and subsetByRare
#521
thpralas
closed
1 month ago
0
changed diversity input check
#520
Insaynoah
closed
2 months ago
5
Fix estimateDiversity input check
#519
TuomasBorman
closed
1 month ago
0
deprecate subset* functions
#518
thpralas
closed
2 months ago
1
deprecate plotNMDS
#517
thpralas
closed
2 months ago
0
Revert "Issue 334 estimate diversity"
#516
TuomasBorman
closed
2 months ago
0
Deprecate functions *_join
#515
thpralas
closed
2 months ago
4
Issue 334 estimate diversity
#514
Insaynoah
closed
2 months ago
9
Rename splitByRanks to agglomerateByRanks and add new option as.list
#513
thpralas
closed
1 month ago
1
Support for Qiime2R
#512
antagomir
closed
2 months ago
3
Replace getExperiment* and testExperiment* functions with getCrossAssociation
#511
thpralas
closed
1 month ago
4
Explain difference between phylogenetic and hierarchy trees
#510
thpralas
closed
2 months ago
2
Add explanation for agglomerateByPrevalence
#509
thpralas
closed
2 months ago
3
Start using rworkflows
#508
TuomasBorman
closed
3 months ago
1
new generic function agglomerateByVariable
#507
thpralas
closed
1 month ago
3
create new generic converter
#506
thpralas
closed
1 week ago
20
rename importers to standardize "import" terminology
#505
thpralas
closed
2 months ago
2
getExperimentCrossCorrelation and SampleMap
#504
TuomasBorman
closed
3 months ago
0
Initialise mediation functions
#503
RiboRings
closed
2 months ago
27
Rename cluster to addCluster
#502
thpralas
closed
2 months ago
2
taxonomyranks
#501
ake123
closed
3 months ago
9
Add pages to pkgdown
#500
TuomasBorman
closed
4 months ago
0
loadFromMetaphlan: support taxonomy-named column
#499
TuomasBorman
closed
4 months ago
0
addHierarchyTree replaces existing tree
#498
TuomasBorman
opened
4 months ago
2
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