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Can be added in future versions (though these are getting into the area of SW for comp neuro in general, rather than pure Neuroinformatics)
### Model construction/management
neuroConstruct
NetP…
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Goal is to view SWCs on Colab.
[Viewing on desktop apps is nice but this project has an explicit goal of realizing all UI in Jupyter. But the ShuTu desktop app runs on windows, macOS, Linux – if o…
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Reconstruction from imageStack and reconstruction from slice should be aligned by using the same activity naming.
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Hey,
first of all thanks for this great library, it's a big help.
I wanted to report some bugs I encountered when using the CLI to reconstruct a mesh.
- The _tessellation-level_ option is calle…
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[SPA.zip](https://github.com/YPZ858/Super-res-code/files/8919107/SPA.zip)
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Received some SWC morphology file from @orena1. The file contains multiple soma contours at different depths-of-field. These contours are being handled for the moment as basal dendrites. We therefore …
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Hi,
Trying to install FISH-quant from this link:
https://imjoy.io/#/app?w=fq-main&plugin=fish-quant/fq-imjoy:FISH-QUANT@stable&upgrade=1
I get the following error:
**Logs**
ModuleNotFoundErro…
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hello, first i want to say va3d is a very powerful tool to process medical images!!! thanks!!!
recently i am using vaa3d to **trace vessel** with **"plug-in" "neuron tracing" "MOST tracing" functio…
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This issue is to document our overal goals, ideas, and related publications. I'll keep the top of the issue as a clean summarry of the discussion in this thread.
## Goal of the Hackathon
Our goa…
EiffL updated
2 years ago
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I have implemented a layer to calculate the morphology reconstruction. When it is used without being considered in the backprop, it works fine in all three backends. But when the backprop has to be ca…