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reconstrue
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brightfield
Reconstruction of biocytin-stained neurons detected in brightfield microscopy image stacks
http://reconstrue.com
Apache License 2.0
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Bump addressable from 2.7.0 to 2.8.1 in /jupyter_book
#239
dependabot[bot]
opened
1 year ago
0
Bump tzinfo from 1.2.5 to 1.2.10 in /jupyter_book
#238
dependabot[bot]
opened
2 years ago
0
Bump nokogiri from 1.10.4 to 1.13.6 in /jupyter_book
#237
dependabot[bot]
opened
2 years ago
0
Bump nokogiri from 1.10.4 to 1.13.4 in /jupyter_book
#236
dependabot[bot]
closed
2 years ago
1
Bump nokogiri from 1.10.4 to 1.13.3 in /jupyter_book
#235
dependabot[bot]
closed
2 years ago
1
Bump nokogiri from 1.10.4 to 1.12.5 in /jupyter_book
#234
dependabot[bot]
closed
2 years ago
1
Bump addressable from 2.7.0 to 2.8.0 in /jupyter_book
#233
dependabot[bot]
closed
1 year ago
1
Bump nokogiri from 1.10.4 to 1.11.5 in /jupyter_book
#232
dependabot[bot]
closed
3 years ago
1
Subset the training data to only those cuboids close to the skeleton in the microscopy volume training on
#231
JohnTigue
opened
3 years ago
0
Colab links are broken on reconstrue.com
#230
JohnTigue
opened
3 years ago
0
Find the 105 Challenge cells in CTDB
#229
JohnTigue
opened
4 years ago
0
Allen brightfield stack cacher
#228
JohnTigue
opened
4 years ago
1
Bump nokogiri from 1.10.4 to 1.10.10 in /jupyter_book
#227
dependabot[bot]
closed
3 years ago
1
Test drive Google's FFN inference demo on a CellTypesDB cell's images.
#226
JohnTigue
opened
4 years ago
0
View AIBS brightfield stacks in Neuroglancer
#225
JohnTigue
opened
4 years ago
4
Plotly and Turbo
#224
JohnTigue
opened
4 years ago
0
Update Turbo to Matplotlib 3.3.0's built-in version
#223
JohnTigue
opened
4 years ago
0
SOX light: low pressure sodium lamps for simpler PSF deconvolution
#222
JohnTigue
opened
4 years ago
0
FC-WFM-Deep
#221
JohnTigue
opened
4 years ago
0
DeepFlux
#220
JohnTigue
opened
4 years ago
0
Tomographic bright field imaging (TBFI) out of OHSU
#219
JohnTigue
opened
4 years ago
0
Strahler Analysis
#218
JohnTigue
opened
4 years ago
0
Java tools
#217
JohnTigue
opened
4 years ago
0
PERI
#216
JohnTigue
opened
4 years ago
0
Image gradients… leading to flux?
#215
JohnTigue
opened
4 years ago
0
Local projections as a form of denoising
#214
JohnTigue
opened
4 years ago
0
Ridge filters
#213
JohnTigue
opened
4 years ago
0
Image comparison techniques of skimage
#212
JohnTigue
opened
4 years ago
0
PyDOM: Sharpness Estimation for Document and Scene Images
#211
JohnTigue
opened
4 years ago
0
PSF deconvolution via chunkflow
#210
JohnTigue
opened
4 years ago
0
Banner images need watermark
#209
JohnTigue
opened
4 years ago
0
Chechs and Rényi entropy ~"BF comparable to EM" 25nm
#208
JohnTigue
opened
4 years ago
0
What is isotropic depth in Allen brightfield data
#207
JohnTigue
opened
4 years ago
0
cv.imshow() has been disabled by colab, defensively
#206
JohnTigue
closed
4 years ago
2
Inverted brightfield is night mode.
#205
JohnTigue
opened
4 years ago
0
Generate training masks via existing segmenter code
#204
JohnTigue
opened
4 years ago
0
skimage Denoising techniques
#203
JohnTigue
opened
4 years ago
0
Shark Viewer out of Janelia
#202
JohnTigue
opened
4 years ago
0
Mesh Skeleton Extraction Using Laplacian Contraction
#201
JohnTigue
opened
4 years ago
0
Seung Lab and Skeletons
#200
JohnTigue
opened
4 years ago
0
Stack as web video
#199
JohnTigue
opened
4 years ago
1
Scale bars
#198
JohnTigue
opened
4 years ago
0
PSF: skimage.restoration has deconvolvers
#197
JohnTigue
opened
4 years ago
0
Denoising via Discrete Cosine Transfrom (DCT) and idct
#196
JohnTigue
opened
4 years ago
0
Py3DViewer: promisingly Colab-y
#195
JohnTigue
opened
4 years ago
0
SWC rendering: three.py
#194
JohnTigue
opened
4 years ago
0
Image downsampling: Datashader Grids
#193
JohnTigue
opened
4 years ago
1
Rolling ball background subtraction and CLAHE
#192
JohnTigue
opened
4 years ago
1
3D training: segmentation mask voxels
#191
JohnTigue
opened
4 years ago
0
SWC slide projection
#190
JohnTigue
opened
4 years ago
2
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