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Hi,I am running mtag using 1trait, i met the following issue:
Trait 1: Dropped 1971 SNPs for duplicate values in the "snp_name" column
Dropped 920120 SNPs due to strand ambiguity, 4996132 SNPs remai…
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Dear Omeed,
When running MTAG on the GWAS results of two related traits (UKB data, phenotypic correlation 0.6), with sample overlap, I picked up some loci that were not significant in the GWAS. Ho…
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e.g. letter ü in Kostümtag.mp4
[+] Processing file: C:\Users\a\Desktop\Kostümtag.mp4
[*] Error: C:\Users\a\Desktop\Kostümtag.mp4 does not exist -> continue
DONE!
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Hello~ We are performing meta-analysis with mtag but get an output file without the N column. Is there any setting we can obtain it? The MTAG codes are listed as follows:
./mtag.py \
--force \
-…
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Hi there,
I got the ValueError like below when I ran the following;
python mtag-master/mtag.py --sumstats data1.txt,data2.txt --p_name pval_raw --out mtag-master/OA_chr --use_beta_se --beta_name…
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I have prepared the format files such as chr,bpos,a1,a2,snpid,beta,se,pval,freq,N,z.When I run the MTAG, I am faced with an error. Here is the log:
Calling ./mtag.py \
--stream-stdout \
--n-min 0.…
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**URL**: https://mtag.io/...
**Browser / Version**: Firefox focus
**Operating System**: Android 7
**Tested Another Browser**: Yes Chrome
**Problem type**: Site is not usable
**Description**: P…
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Hello,
I am thinking of using MTAG to meta-analyse (not with equal heritability nor perfect genetic correlation) different traits from the same condition/disease. I am working with two cohort data …
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Hi,
I found a huge discrepancy in the genetic correlation & mean of chi^2 between LDSC and MTAG.
LDSC = 0.47 vs. MTAG = 0.27
Do you have any idea? Please help.
LDSC:
Heritability of phenoty…
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Hello,
I am running mtag for three different traits using the EAS LD scores. Each trait is the meta-analysis output of several studies. I have previously QCed the mtag input files. That has as a r…