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RNeXML should optionally be able to include all the basic metadata listed on the [MIAPA checklist](https://github.com/miapa/miapa/blob/master/checklist/MIAPA-checklist.md), hopefully guiding users tha…
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Perhaps mostly useful while `nexld` implementation is evolving, but it would be nice to include a version (& maybe even short commit hash?) in a JSON-LD file we create or translate from a nexml file (…
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- [ ] give David details of NeXML schema for the items that Mesquite might save in an export file to be uploaded into OpenTree, including (1) analysis details, (2) ingroup node, (3) exemplar/non-exemp…
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This would allow easy retrieval of latest version of a particular file.
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Do you have REST endpoints implemented for this yet? (Mostly opening this issue so I know when to return to https://github.com/ropensci/RNeXML/issues/55 to implement this interface). btw, the whole …
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The documentation for the 'study' method
https://github.com/OpenTreeOfLife/phylesystem-api/blob/master/docs/README.md#fetch-a-study
says
If the URL ends with a file extension, then the file type w…
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When I have scores on species or collecting events, and I have a export file with genera or higher ranks, I should be able to offer and option to collect scores from all subordinate categories. So tha…
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See - http://mx.phenomix.org/index.php/Main_Page
I wonder if we shouldn't mention it anymore, or say it's deprecated.
yeban updated
9 years ago
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Does dendroscope support node attributes in nexml files? I've written some code to color nodes (based on regular expressions on taxa) using the Python dendropy package, but when I try to load such a …
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When I run
```
mvn clean install
```
I can see exciting new NeXML output for one file / set of tests, output to this path:
```
./ami-plugin/target/phylo/image/003.pbm.png/
├── edited.nexml.xml
└──…