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ContentMine
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phylotree
A repository for ami-phylotree development
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Binomial lookup correction not fully working
#54
rossmounce
opened
9 years ago
1
How to run the new code/methods on a set of image files?
#53
rossmounce
opened
9 years ago
2
"Valid" Newick problems
#52
petermr
closed
9 years ago
7
Logfile
#51
petermr
opened
9 years ago
0
Serious design flaw in `cmine`+`ami-phylo`
#50
petermr
opened
9 years ago
0
OTU labels are now entirely numerical
#49
rossmounce
closed
9 years ago
3
Incorrect line breaks from Tesseract.
#48
petermr
opened
9 years ago
0
Failure to match tips to labels (implement Hungarian algorithm? )
#47
petermr
opened
9 years ago
0
Untrapped Tesseract failure
#46
petermr
opened
9 years ago
0
Check tip count against HOCR output
#45
petermr
opened
9 years ago
0
Validating scientific names after `ami-phylo` parse.
#44
petermr
opened
9 years ago
4
Tidying NCBI taxdump
#43
petermr
opened
9 years ago
9
Local Genus and species lookup
#42
petermr
closed
9 years ago
1
Configuration file for Tesseract
#41
petermr
opened
9 years ago
1
Compare no. tips vs HOCR phrases
#40
rossmounce
opened
9 years ago
0
NeXML validation issue
#39
rossmounce
opened
9 years ago
0
Missing edge labels
#38
petermr
opened
9 years ago
0
Add pruning for incomplete or malformed tips
#37
petermr
opened
9 years ago
0
Implement 50 images as test material
#36
petermr
opened
9 years ago
1
Consistency of Binomial and EGID
#35
petermr
opened
9 years ago
0
Escape high Unicode points
#34
petermr
opened
9 years ago
0
Image tests for EGID lookup. Incorrect OCR causes 3 to -> "8" in EGID
#33
rossmounce
opened
9 years ago
1
Failing test: EGID in image does not match Binomial
#32
rossmounce
opened
9 years ago
0
Test the effect of using character whitelists in tesseract
#31
rossmounce
opened
9 years ago
0
Unicode chars in NeXML output not good for some tree viewers
#30
rossmounce
opened
9 years ago
0
Separate characters and trees in pixel analysis
#29
petermr
opened
9 years ago
0
PMR_NOTES Extracting fields from OTUs
#28
petermr
opened
9 years ago
2
Syntax for tips
#27
petermr
opened
9 years ago
0
snatc
#26
petermr
opened
9 years ago
0
Deleting Tip nodes
#25
petermr
opened
9 years ago
3
suggested OCR correction rules
#24
rossmounce
opened
9 years ago
0
NEXML OTU format
#23
petermr
opened
9 years ago
2
Conflict in Newick validity between R & p4/STK2
#22
rossmounce
opened
9 years ago
4
Singleton nodes in Newick
#21
petermr
opened
9 years ago
11
Detecting/correcting garbles in OCR for ami-phylo
#20
petermr
opened
9 years ago
3
preprocessing of newick for STK
#19
petermr
opened
9 years ago
7
Multiple branches in output
#18
petermr
opened
9 years ago
4
Erroneous Newick output
#17
rossmounce
opened
9 years ago
13
validation of Newick output
#16
petermr
opened
9 years ago
7
Logfile
#15
petermr
opened
9 years ago
0
commanline: output Newick
#14
petermr
opened
9 years ago
0
commandline: output Nexml
#13
petermr
opened
9 years ago
0
commandline: output combined SVG
#12
petermr
closed
9 years ago
0
commandline: output raw SVG
#11
petermr
opened
9 years ago
0
commandline: output rawHOCR
#10
petermr
opened
9 years ago
0
ami-phylo commandline
#9
petermr
opened
9 years ago
2
[Lookup] Accession number -> TaxonID
#8
rossmounce
opened
9 years ago
1
Navigation through phylotree repository
#7
petermr
opened
9 years ago
0
Missing tip labels
#6
petermr
opened
9 years ago
3
creation of supertree
#5
rossmounce
opened
9 years ago
0
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