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@BEL-CO is using Mindboggle data to test our tissue segmentation algorithm. We discovered that 14 of the MRIs in the Mindboggle101 catalog have incorrect orientation direction data in the image header…
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In version 0.12 we've noticed for some time that there's a severe performance degradation, from a few minutes (v 0.10) to hours (v 0.12) for a typical RNAseq sample. We use Set::IntervalTree in our to…
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NKI dataset has T2w image. Should include it in the preprocessing to improve the reconall pial surface estimation.
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I am trying to benchmark NKI code generated from the corresponding PyTorch code. My workflow is as follows:
1. I run the PyTorch kernel and extract the `.pb` file
2. I compile the NKI kernel using:
…
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Hi,
Should it be the inverse of covariance matrix here? https://github.com/ctgk/PRML/blob/47d9830b39e91690cedb27003934df85cfb8c5c7/prml/rv/multivariate_gaussian_mixture.py#L124
i.e.
` D_sq = np.sum…
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See title.
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@JoostJM I dont have admin access, can you kill this? - its confusing I think.
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Hello,
Thanks for opensourcing your code. Really appreciate it. I am new to this area and couldnt figure out where to download the pickle and npz files such as CORR_tensor_NKI-RS_subset.pickle. Wou…
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From Module-Node created by [esma-g](https://github.com/esma-g): CodeYourFuture/Module-Node#21
### Coursework content
Think of the times when you are stressed, feeling tired, or rushed, as these…
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Hi Bernd,
I'm trying the new Metrix maven-dev code branch, and I'm hitting issues with processing InterOps that were previously fine:
[SEVERE] [Wed 07-01-2015 16:15:41] [nki.parsers.illumina.Extract…